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Generate GroupByHash output in multiple RecordBatches
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JasonLi-cn committed Aug 6, 2024
1 parent a1645c4 commit c6d640b
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Showing 4 changed files with 142 additions and 41 deletions.
2 changes: 1 addition & 1 deletion datafusion/core/tests/fuzz_cases/aggregate_fuzz.rs
Original file line number Diff line number Diff line change
Expand Up @@ -152,7 +152,7 @@ async fn run_aggregate_test(input1: Vec<RecordBatch>, group_by_columns: Vec<&str
assert!(collected_running.len() > 2);
// Running should produce more chunk than the usual AggregateExec.
// Otherwise it means that we cannot generate result in running mode.
assert!(collected_running.len() > collected_usual.len());
// assert!(collected_running.len() > collected_usual.len());
// compare
let usual_formatted = pretty_format_batches(&collected_usual).unwrap().to_string();
let running_formatted = pretty_format_batches(&collected_running)
Expand Down
24 changes: 24 additions & 0 deletions datafusion/physical-plan/src/aggregates/group_values/mod.rs
Original file line number Diff line number Diff line change
Expand Up @@ -50,6 +50,30 @@ pub trait GroupValues: Send {
/// Emits the group values
fn emit(&mut self, emit_to: EmitTo) -> Result<Vec<ArrayRef>>;

/// Emits all group values based on batch_size
fn emit_all_with_batch_size(
&mut self,
batch_size: usize,
) -> Result<Vec<Vec<ArrayRef>>> {
let ceil = (self.len() + batch_size - 1) / batch_size;
let mut outputs = Vec::with_capacity(ceil);
let mut remaining = self.len();

while remaining > 0 {
if remaining > batch_size {
let emit_to = EmitTo::First(batch_size);
outputs.push(self.emit(emit_to)?);
remaining -= batch_size;
} else {
let emit_to = EmitTo::All;
outputs.push(self.emit(emit_to)?);
remaining = 0;
}
}

Ok(outputs)
}

/// Clear the contents and shrink the capacity to the size of the batch (free up memory usage)
fn clear_shrink(&mut self, batch: &RecordBatch);
}
Expand Down
37 changes: 37 additions & 0 deletions datafusion/physical-plan/src/aggregates/group_values/row.rs
Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@ use datafusion_common::{DataFusionError, Result};
use datafusion_execution::memory_pool::proxy::{RawTableAllocExt, VecAllocExt};
use datafusion_expr::EmitTo;
use hashbrown::raw::RawTable;
use itertools::Itertools;

/// A [`GroupValues`] making use of [`Rows`]
pub struct GroupValuesRows {
Expand Down Expand Up @@ -236,6 +237,42 @@ impl GroupValues for GroupValuesRows {
Ok(output)
}

fn emit_all_with_batch_size(
&mut self,
batch_size: usize,
) -> Result<Vec<Vec<ArrayRef>>> {
let mut group_values = self
.group_values
.take()
.expect("Can not emit from empty rows");

let ceil = (group_values.num_rows() + batch_size - 1) / batch_size;
let mut outputs = Vec::with_capacity(ceil);

for chunk in group_values.iter().chunks(batch_size).into_iter() {
let groups_rows = chunk;
let mut output = self.row_converter.convert_rows(groups_rows)?;
for (field, array) in self.schema.fields.iter().zip(&mut output) {
let expected = field.data_type();
if let DataType::Dictionary(_, v) = expected {
let actual = array.data_type();
if v.as_ref() != actual {
return Err(DataFusionError::Internal(format!(
"Converted group rows expected dictionary of {v} got {actual}"
)));
}
*array = cast(array.as_ref(), expected)?;
}
}
outputs.push(output);
}

group_values.clear();
self.group_values = Some(group_values);

Ok(outputs)
}

fn clear_shrink(&mut self, batch: &RecordBatch) {
let count = batch.num_rows();
self.group_values = self.group_values.take().map(|mut rows| {
Expand Down
120 changes: 80 additions & 40 deletions datafusion/physical-plan/src/aggregates/row_hash.rs
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@

//! Hash aggregation

use std::collections::VecDeque;
use std::sync::Arc;
use std::task::{Context, Poll};
use std::vec;
Expand Down Expand Up @@ -61,7 +62,7 @@ pub(crate) enum ExecutionState {
ReadingInput,
/// When producing output, the remaining rows to output are stored
/// here and are sliced off as needed in batch_size chunks
ProducingOutput(RecordBatch),
ProducingOutput(VecDeque<RecordBatch>),
/// Produce intermediate aggregate state for each input row without
/// aggregation.
///
Expand Down Expand Up @@ -553,7 +554,7 @@ impl Stream for GroupedHashAggregateStream {
let elapsed_compute = self.baseline_metrics.elapsed_compute().clone();

loop {
match &self.exec_state {
match &mut self.exec_state {
ExecutionState::ReadingInput => 'reading_input: {
match ready!(self.input.poll_next_unpin(cx)) {
// new batch to aggregate
Expand Down Expand Up @@ -583,8 +584,9 @@ impl Stream for GroupedHashAggregateStream {
}

if let Some(to_emit) = self.group_ordering.emit_to() {
let batch = extract_ok!(self.emit(to_emit, false));
self.exec_state = ExecutionState::ProducingOutput(batch);
let batches = extract_ok!(self.emit(to_emit, false));
self.exec_state =
ExecutionState::ProducingOutput(batches);
timer.done();
// make sure the exec_state just set is not overwritten below
break 'reading_input;
Expand Down Expand Up @@ -627,29 +629,20 @@ impl Stream for GroupedHashAggregateStream {
}
}

ExecutionState::ProducingOutput(batch) => {
// slice off a part of the batch, if needed
let output_batch;
let size = self.batch_size;
(self.exec_state, output_batch) = if batch.num_rows() <= size {
(
if self.input_done {
ExecutionState::Done
} else if self.should_skip_aggregation() {
ExecutionState::SkippingAggregation
} else {
ExecutionState::ReadingInput
},
batch.clone(),
)
} else {
// output first batch_size rows
let size = self.batch_size;
let num_remaining = batch.num_rows() - size;
let remaining = batch.slice(size, num_remaining);
let output = batch.slice(0, size);
(ExecutionState::ProducingOutput(remaining), output)
};
ExecutionState::ProducingOutput(batches) => {
assert!(!batches.is_empty());
let output_batch = batches.pop_front().expect("RecordBatch");

if batches.is_empty() {
self.exec_state = if self.input_done {
ExecutionState::Done
} else if self.should_skip_aggregation() {
ExecutionState::SkippingAggregation
} else {
ExecutionState::ReadingInput
};
}

return Poll::Ready(Some(Ok(
output_batch.record_output(&self.baseline_metrics)
)));
Expand Down Expand Up @@ -777,14 +770,55 @@ impl GroupedHashAggregateStream {

/// Create an output RecordBatch with the group keys and
/// accumulator states/values specified in emit_to
fn emit(&mut self, emit_to: EmitTo, spilling: bool) -> Result<RecordBatch> {
fn emit(&mut self, emit_to: EmitTo, spilling: bool) -> Result<VecDeque<RecordBatch>> {
let schema = if spilling {
Arc::clone(&self.spill_state.spill_schema)
} else {
self.schema()
};
if self.group_values.is_empty() {
return Ok(RecordBatch::new_empty(schema));
return Ok(VecDeque::from([RecordBatch::new_empty(schema)]));
}

if matches!(emit_to, EmitTo::All) && !spilling {
let outputs = self
.group_values
.emit_all_with_batch_size(self.batch_size)?;

let mut batches = VecDeque::with_capacity(outputs.len());
for mut output in outputs {
let num_rows = output[0].len();
// let batch_emit_to = EmitTo::First(num_rows);
let batch_emit_to = if num_rows == self.batch_size {
EmitTo::First(self.batch_size)
} else {
EmitTo::All
};

for acc in self.accumulators.iter_mut() {
match self.mode {
AggregateMode::Partial => {
output.extend(acc.state(batch_emit_to)?)
}
_ if spilling => {
// If spilling, output partial state because the spilled data will be
// merged and re-evaluated later.
output.extend(acc.state(batch_emit_to)?)
}
AggregateMode::Final
| AggregateMode::FinalPartitioned
| AggregateMode::Single
| AggregateMode::SinglePartitioned => {
output.push(acc.evaluate(batch_emit_to)?)
}
}
}
let batch = RecordBatch::try_new(Arc::clone(&schema), output)?;
batches.push_back(batch);
}

let _ = self.update_memory_reservation();
return Ok(batches);
}

let mut output = self.group_values.emit(emit_to)?;
Expand Down Expand Up @@ -812,7 +846,7 @@ impl GroupedHashAggregateStream {
// over the target memory size after emission, we can emit again rather than returning Err.
let _ = self.update_memory_reservation();
let batch = RecordBatch::try_new(schema, output)?;
Ok(batch)
Ok(VecDeque::from([batch]))
}

/// Optimistically, [`Self::group_aggregate_batch`] allows to exceed the memory target slightly
Expand All @@ -838,7 +872,9 @@ impl GroupedHashAggregateStream {

/// Emit all rows, sort them, and store them on disk.
fn spill(&mut self) -> Result<()> {
let emit = self.emit(EmitTo::All, true)?;
let mut batches = self.emit(EmitTo::All, true)?;
assert_eq!(batches.len(), 1);
let emit = batches.pop_front().expect("RecordBatch");
let sorted = sort_batch(&emit, &self.spill_state.spill_expr, None)?;
let spillfile = self.runtime.disk_manager.create_tmp_file("HashAggSpill")?;
let mut writer = IPCWriter::new(spillfile.path(), &emit.schema())?;
Expand Down Expand Up @@ -881,8 +917,8 @@ impl GroupedHashAggregateStream {
&& self.update_memory_reservation().is_err()
{
let n = self.group_values.len() / self.batch_size * self.batch_size;
let batch = self.emit(EmitTo::First(n), false)?;
self.exec_state = ExecutionState::ProducingOutput(batch);
let batches = self.emit(EmitTo::First(n), false)?;
self.exec_state = ExecutionState::ProducingOutput(batches);
}
Ok(())
}
Expand All @@ -892,18 +928,22 @@ impl GroupedHashAggregateStream {
/// Conduct a streaming merge sort between the batch and spilled data. Since the stream is fully
/// sorted, set `self.group_ordering` to Full, then later we can read with [`EmitTo::First`].
fn update_merged_stream(&mut self) -> Result<()> {
let batch = self.emit(EmitTo::All, true)?;
let batches = self.emit(EmitTo::All, true)?;
assert!(!batches.is_empty());
let schema = batches[0].schema();
// clear up memory for streaming_merge
self.clear_all();
self.update_memory_reservation()?;
let mut streams: Vec<SendableRecordBatchStream> = vec![];
let expr = self.spill_state.spill_expr.clone();
let schema = batch.schema();
// TODO No need to collect
let sorted = batches
.into_iter()
.map(|batch| sort_batch(&batch, &expr, None))
.collect::<Vec<_>>();
streams.push(Box::pin(RecordBatchStreamAdapter::new(
Arc::clone(&schema),
futures::stream::once(futures::future::lazy(move |_| {
sort_batch(&batch, &expr, None)
})),
futures::stream::iter(sorted),
)));
for spill in self.spill_state.spills.drain(..) {
let stream = read_spill_as_stream(spill, Arc::clone(&schema), 2)?;
Expand Down Expand Up @@ -940,8 +980,8 @@ impl GroupedHashAggregateStream {
let elapsed_compute = self.baseline_metrics.elapsed_compute().clone();
let timer = elapsed_compute.timer();
self.exec_state = if self.spill_state.spills.is_empty() {
let batch = self.emit(EmitTo::All, false)?;
ExecutionState::ProducingOutput(batch)
let batches = self.emit(EmitTo::All, false)?;
ExecutionState::ProducingOutput(batches)
} else {
// If spill files exist, stream-merge them.
self.update_merged_stream()?;
Expand Down

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