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ARROW-22: [C++] Convert flat Parquet schemas to Arrow schemas
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I'm going to limit the amount of nested data (especially repeated fields) cases in this patch as I haven't yet thought through the nested data reassembly from repetition / definition levels. Since the effective Arrow schemas may "collapse" multiple levels of nesting (for example: 3-level array encoding -- see https://github.com/apache/parquet-cpp/blob/master/src/parquet/schema/types.h), we'll need to track the logical correspondence between repetition and definition levels so that the right null bits can be set easily during reassembly.

Closes #37. Closes #38. Closes #39

Author: Wes McKinney <wesm@apache.org>
Author: Uwe L. Korn <uwelk@xhochy.com>

Closes #41 from wesm/ARROW-22 and squashes the following commits:

f388210 [Wes McKinney] Correct typo in Layout.md (thanks @takahirox)
e5c429a [Wes McKinney] Test for some unsupported Parquet schema types, add unannotated FIXED_LEN_BYTE_ARRAY to List<UInt8>
54daa9b [Wes McKinney] Refactor tests to invoke FromParquetSchema
74d6bae [Wes McKinney] Convert BYTE_ARRAY to StringType or List<UInt8> depending on the logical type
b7b9ca9 [Uwe L. Korn] Add basic conversion for primitive types
0e2a7f1 [Uwe L. Korn] Add macro for adding dependencies to tests
0dd1109 [Uwe L. Korn] ARROW-78: Add constructor for DecimalType
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wesm committed Mar 27, 2016
1 parent 0a8979d commit d3cb6b4
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11 changes: 11 additions & 0 deletions cpp/CMakeLists.txt
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Expand Up @@ -378,6 +378,16 @@ function(ADD_ARROW_TEST_DEPENDENCIES REL_TEST_NAME)
add_dependencies(${TEST_NAME} ${ARGN})
endfunction()

# A wrapper for target_link_libraries() that is compatible with NO_TESTS.
function(ARROW_TEST_LINK_LIBRARIES REL_TEST_NAME)
if(NO_TESTS)
return()
endif()
get_filename_component(TEST_NAME ${REL_TEST_NAME} NAME_WE)

target_link_libraries(${TEST_NAME} ${ARGN})
endfunction()

enable_testing()

############################################################
Expand Down Expand Up @@ -528,6 +538,7 @@ set(ARROW_SRCS
src/arrow/ipc/metadata-internal.cc

src/arrow/types/construct.cc
src/arrow/types/decimal.cc
src/arrow/types/json.cc
src/arrow/types/list.cc
src/arrow/types/primitive.cc
Expand Down
8 changes: 7 additions & 1 deletion cpp/src/arrow/parquet/CMakeLists.txt
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Expand Up @@ -19,17 +19,23 @@
# arrow_parquet : Arrow <-> Parquet adapter

set(PARQUET_SRCS
schema.cc
)

set(PARQUET_LIBS
arrow
${PARQUET_SHARED_LIB}
)

add_library(arrow_parquet STATIC
add_library(arrow_parquet SHARED
${PARQUET_SRCS}
)
target_link_libraries(arrow_parquet ${PARQUET_LIBS})
SET_TARGET_PROPERTIES(arrow_parquet PROPERTIES LINKER_LANGUAGE CXX)

ADD_ARROW_TEST(parquet-schema-test)
ARROW_TEST_LINK_LIBRARIES(parquet-schema-test arrow_parquet)

# Headers: top level
install(FILES
DESTINATION include/arrow/parquet)
147 changes: 147 additions & 0 deletions cpp/src/arrow/parquet/parquet-schema-test.cc
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@@ -0,0 +1,147 @@
// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.

#include <memory>
#include <vector>

#include "gtest/gtest.h"

#include "arrow/test-util.h"
#include "arrow/type.h"
#include "arrow/util/status.h"

#include "arrow/parquet/schema.h"

namespace arrow {

namespace parquet {

using parquet_cpp::Repetition;
using parquet_cpp::schema::NodePtr;
using parquet_cpp::schema::GroupNode;
using parquet_cpp::schema::PrimitiveNode;

const auto BOOL = std::make_shared<BooleanType>();
const auto UINT8 = std::make_shared<UInt8Type>();
const auto INT32 = std::make_shared<Int32Type>();
const auto INT64 = std::make_shared<Int64Type>();
const auto FLOAT = std::make_shared<FloatType>();
const auto DOUBLE = std::make_shared<DoubleType>();
const auto UTF8 = std::make_shared<StringType>();
const auto BINARY = std::make_shared<ListType>(
std::make_shared<Field>("", UINT8));

class TestConvertParquetSchema : public ::testing::Test {
public:
virtual void SetUp() {}

void CheckFlatSchema(const std::shared_ptr<Schema>& expected_schema) {
ASSERT_EQ(expected_schema->num_fields(), result_schema_->num_fields());
for (int i = 0; i < expected_schema->num_fields(); ++i) {
auto lhs = result_schema_->field(i);
auto rhs = expected_schema->field(i);
EXPECT_TRUE(lhs->Equals(rhs))
<< i << " " << lhs->ToString() << " != " << rhs->ToString();
}
}

Status ConvertSchema(const std::vector<NodePtr>& nodes) {
NodePtr schema = GroupNode::Make("schema", Repetition::REPEATED, nodes);
descr_.Init(schema);
return FromParquetSchema(&descr_, &result_schema_);
}

protected:
parquet_cpp::SchemaDescriptor descr_;
std::shared_ptr<Schema> result_schema_;
};

TEST_F(TestConvertParquetSchema, ParquetFlatPrimitives) {
std::vector<NodePtr> parquet_fields;
std::vector<std::shared_ptr<Field>> arrow_fields;

parquet_fields.push_back(
PrimitiveNode::Make("boolean", Repetition::REQUIRED, parquet_cpp::Type::BOOLEAN));
arrow_fields.push_back(std::make_shared<Field>("boolean", BOOL, false));

parquet_fields.push_back(
PrimitiveNode::Make("int32", Repetition::REQUIRED, parquet_cpp::Type::INT32));
arrow_fields.push_back(std::make_shared<Field>("int32", INT32, false));

parquet_fields.push_back(
PrimitiveNode::Make("int64", Repetition::REQUIRED, parquet_cpp::Type::INT64));
arrow_fields.push_back(std::make_shared<Field>("int64", INT64, false));

parquet_fields.push_back(
PrimitiveNode::Make("float", Repetition::OPTIONAL, parquet_cpp::Type::FLOAT));
arrow_fields.push_back(std::make_shared<Field>("float", FLOAT));

parquet_fields.push_back(
PrimitiveNode::Make("double", Repetition::OPTIONAL, parquet_cpp::Type::DOUBLE));
arrow_fields.push_back(std::make_shared<Field>("double", DOUBLE));

parquet_fields.push_back(
PrimitiveNode::Make("binary", Repetition::OPTIONAL,
parquet_cpp::Type::BYTE_ARRAY));
arrow_fields.push_back(std::make_shared<Field>("binary", BINARY));

parquet_fields.push_back(
PrimitiveNode::Make("string", Repetition::OPTIONAL,
parquet_cpp::Type::BYTE_ARRAY,
parquet_cpp::LogicalType::UTF8));
arrow_fields.push_back(std::make_shared<Field>("string", UTF8));

parquet_fields.push_back(
PrimitiveNode::Make("flba-binary", Repetition::OPTIONAL,
parquet_cpp::Type::FIXED_LEN_BYTE_ARRAY,
parquet_cpp::LogicalType::NONE, 12));
arrow_fields.push_back(std::make_shared<Field>("flba-binary", BINARY));

auto arrow_schema = std::make_shared<Schema>(arrow_fields);
ASSERT_OK(ConvertSchema(parquet_fields));

CheckFlatSchema(arrow_schema);
}

TEST_F(TestConvertParquetSchema, UnsupportedThings) {
std::vector<NodePtr> unsupported_nodes;

unsupported_nodes.push_back(
PrimitiveNode::Make("int96", Repetition::REQUIRED, parquet_cpp::Type::INT96));

unsupported_nodes.push_back(
GroupNode::Make("repeated-group", Repetition::REPEATED, {}));

unsupported_nodes.push_back(
PrimitiveNode::Make("int32", Repetition::OPTIONAL,
parquet_cpp::Type::INT32, parquet_cpp::LogicalType::DATE));

unsupported_nodes.push_back(
PrimitiveNode::Make("int64", Repetition::OPTIONAL,
parquet_cpp::Type::INT64, parquet_cpp::LogicalType::TIMESTAMP_MILLIS));

for (const NodePtr& node : unsupported_nodes) {
ASSERT_RAISES(NotImplemented, ConvertSchema({node}));
}
}

TEST(TestNodeConversion, DateAndTime) {
}

} // namespace parquet

} // namespace arrow
178 changes: 178 additions & 0 deletions cpp/src/arrow/parquet/schema.cc
Original file line number Diff line number Diff line change
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// Licensed to the Apache Software Foundation (ASF) under one
// or more contributor license agreements. See the NOTICE file
// distributed with this work for additional information
// regarding copyright ownership. The ASF licenses this file
// to you under the Apache License, Version 2.0 (the
// "License"); you may not use this file except in compliance
// with the License. You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing,
// software distributed under the License is distributed on an
// "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
// KIND, either express or implied. See the License for the
// specific language governing permissions and limitations
// under the License.

#include "arrow/parquet/schema.h"

#include <vector>

#include "parquet/api/schema.h"

#include "arrow/util/status.h"
#include "arrow/types/decimal.h"

using parquet_cpp::schema::Node;
using parquet_cpp::schema::NodePtr;
using parquet_cpp::schema::GroupNode;
using parquet_cpp::schema::PrimitiveNode;

using parquet_cpp::LogicalType;

namespace arrow {

namespace parquet {

const auto BOOL = std::make_shared<BooleanType>();
const auto UINT8 = std::make_shared<UInt8Type>();
const auto INT32 = std::make_shared<Int32Type>();
const auto INT64 = std::make_shared<Int64Type>();
const auto FLOAT = std::make_shared<FloatType>();
const auto DOUBLE = std::make_shared<DoubleType>();
const auto UTF8 = std::make_shared<StringType>();
const auto BINARY = std::make_shared<ListType>(
std::make_shared<Field>("", UINT8));

TypePtr MakeDecimalType(const PrimitiveNode* node) {
int precision = node->decimal_metadata().precision;
int scale = node->decimal_metadata().scale;
return std::make_shared<DecimalType>(precision, scale);
}

static Status FromByteArray(const PrimitiveNode* node, TypePtr* out) {
switch (node->logical_type()) {
case LogicalType::UTF8:
*out = UTF8;
break;
default:
// BINARY
*out = BINARY;
break;
}
return Status::OK();
}

static Status FromFLBA(const PrimitiveNode* node, TypePtr* out) {
switch (node->logical_type()) {
case LogicalType::NONE:
*out = BINARY;
break;
case LogicalType::DECIMAL:
*out = MakeDecimalType(node);
break;
default:
return Status::NotImplemented("unhandled type");
break;
}

return Status::OK();
}

static Status FromInt32(const PrimitiveNode* node, TypePtr* out) {
switch (node->logical_type()) {
case LogicalType::NONE:
*out = INT32;
break;
default:
return Status::NotImplemented("Unhandled logical type for int32");
break;
}
return Status::OK();
}

static Status FromInt64(const PrimitiveNode* node, TypePtr* out) {
switch (node->logical_type()) {
case LogicalType::NONE:
*out = INT64;
break;
default:
return Status::NotImplemented("Unhandled logical type for int64");
break;
}
return Status::OK();
}

// TODO: Logical Type Handling
Status NodeToField(const NodePtr& node, std::shared_ptr<Field>* out) {
std::shared_ptr<DataType> type;

if (node->is_repeated()) {
return Status::NotImplemented("No support yet for repeated node types");
}

if (node->is_group()) {
const GroupNode* group = static_cast<const GroupNode*>(node.get());
std::vector<std::shared_ptr<Field>> fields(group->field_count());
for (int i = 0; i < group->field_count(); i++) {
RETURN_NOT_OK(NodeToField(group->field(i), &fields[i]));
}
type = std::make_shared<StructType>(fields);
} else {
// Primitive (leaf) node
const PrimitiveNode* primitive = static_cast<const PrimitiveNode*>(node.get());

switch (primitive->physical_type()) {
case parquet_cpp::Type::BOOLEAN:
type = BOOL;
break;
case parquet_cpp::Type::INT32:
RETURN_NOT_OK(FromInt32(primitive, &type));
break;
case parquet_cpp::Type::INT64:
RETURN_NOT_OK(FromInt64(primitive, &type));
break;
case parquet_cpp::Type::INT96:
// TODO: Do we have that type in Arrow?
// type = TypePtr(new Int96Type());
return Status::NotImplemented("int96");
case parquet_cpp::Type::FLOAT:
type = FLOAT;
break;
case parquet_cpp::Type::DOUBLE:
type = DOUBLE;
break;
case parquet_cpp::Type::BYTE_ARRAY:
// TODO: Do we have that type in Arrow?
RETURN_NOT_OK(FromByteArray(primitive, &type));
break;
case parquet_cpp::Type::FIXED_LEN_BYTE_ARRAY:
RETURN_NOT_OK(FromFLBA(primitive, &type));
break;
}
}

*out = std::make_shared<Field>(node->name(), type, !node->is_required());
return Status::OK();
}

Status FromParquetSchema(const parquet_cpp::SchemaDescriptor* parquet_schema,
std::shared_ptr<Schema>* out) {
// TODO(wesm): Consider adding an arrow::Schema name attribute, which comes
// from the root Parquet node
const GroupNode* schema_node = static_cast<const GroupNode*>(
parquet_schema->schema().get());

std::vector<std::shared_ptr<Field>> fields(schema_node->field_count());
for (int i = 0; i < schema_node->field_count(); i++) {
RETURN_NOT_OK(NodeToField(schema_node->field(i), &fields[i]));
}

*out = std::make_shared<Schema>(fields);
return Status::OK();
}

} // namespace parquet

} // namespace arrow
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