nutrition_tools v0.3.0-alpha

A working release of taxaHFE and dietML.
DietML -

switch from Caret to tidymodels for more recent updates
makes SHAP figures (for binary classification and regression)
tons of added flags for control, especially for HP tuning
calculates null models
much better messaging to the user
tons of bug fixes (this is an alpha build!)
works with singularity (parallel computing too)

taxaHFE -

optimized RF for 20% speed increase
allows for stratified subsampling
allows user to input covariates to be included in RF models
changed to functional programming (better maintenance)
tons of bug fixes
works with singularity (parallel computing does too)

Docker image located here: https://hub.docker.com/r/aoliver44/nutrition_tools/tags

nutrition_tools v0.2.0-alpha

Major updates to nutrition_tools

• release of dietML, with 3 new models (random forest + LASSO, Ridge, and ElasticNet)
• New "Automatic" hyperparameter search space generation
• Updated documentation
• Updated docker image with non-root privileges (and protections!)
• New checks and new error messages
• Has been beta tested by others with their own data and works!

nutrition_tools v0.1.0-alpha

The first release of Nutrition ML Tools!

• Initial working (with supplied simulated data) alpha build of the generic_read_in.R and generic_combine.R scripts.
• Dockerhub supplied image here as well.
• Example commands provided
• Initial documentation provided