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Rosetta stitching fix #227

Merged
merged 10 commits into from
Aug 29, 2022
Merged

Rosetta stitching fix #227

merged 10 commits into from
Aug 29, 2022

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camisowers
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@camisowers camisowers commented Aug 27, 2022

If you haven't already, please read through our contributing guidelines before opening your PR

What is the purpose of this PR?
Closes #221.
Allows for stitching together of different size fov images.

How did you implement your changes
Adjust get_max_img_size to have optional fov_list arg which returns the max size for only the specified fovs in the run, and then edit copy_rosetta_files to return the value. The create_tiled_comparison also takes in the max image size as an argument. The rosetta notebook now requires the bin file directory to check the json run files.

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@camisowers camisowers self-assigned this Aug 27, 2022
@camisowers camisowers requested a review from ngreenwald August 29, 2022 18:23
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Just one function that needs to be updated

toffy/image_stitching.py Outdated Show resolved Hide resolved
@camisowers camisowers requested a review from ngreenwald August 29, 2022 22:06
@ngreenwald ngreenwald merged commit 6ccd446 into main Aug 29, 2022
@ngreenwald ngreenwald deleted the rosetta_stitching_fix branch August 29, 2022 22:22
@camisowers camisowers added the enhancement New feature or request label Sep 6, 2022
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Rosetta fine tuning stitching
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