fix int96 conversion to read timestamps correctly #2
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xhochy
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Mar 14, 2019
andygrove
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Mar 15, 2019
I'm sure I'll need some guidance on this one from @sunchao or @liurenjie1024 but I am keen to get parquet support added for primitive types so that I can actually use DataFusion and Arrow in production at some point. Author: Andy Grove <andygrove73@gmail.com> Author: Neville Dipale <nevilledips@gmail.com> Author: Andy Grove <andygrove@users.noreply.github.com> Closes apache#3851 from andygrove/ARROW-4466 and squashes the following commits: 3158529 <Andy Grove> add test for reading small batches 549c829 <Andy Grove> Remove hard-coded batch size, fix nits 8d2df06 <Andy Grove> move schema projection function from arrow into datafusion 204db83 <Andy Grove> fix timestamp nano issue 73aa934 <Andy Grove> Remove println from test 25d34ac <Andy Grove> Make INT32/64/96 handling consistent with C++ implementation 9b1308f <Andy Grove> clean up handling of INT96 and DATE/TIME/TIMESTAMP types in schema converter 1ec815b <Andy Grove> Clean up imports 023dc25 <Andy Grove> Merge pull request #2 from nevi-me/ARROW-4466 02b2ed3 <Neville Dipale> fix int96 conversion to read timestamps correctly 2aeea24 <Andy Grove> remove println from tests 9d3047a <Andy Grove> code cleanup 639e13e <Andy Grove> null handling for int96 1503855 <Andy Grove> handle nulls for binary data 80cf303 <Andy Grove> add date support 5a3368c <Andy Grove> Remove unnecessary slice, fix null handling 306d07a <Neville Dipale> fmt 3c711a5 <Neville Dipale> immediately allocate vec e6cbbaa <Neville Dipale> replace read_column! macro with generic 607a29f <Andy Grove> return result if there are null values e8aa784 <Andy Grove> revert temp debug change to error messages 6457c36 <Andy Grove> use parquet::reader::schema::parquet_to_arrow_schema c56510e <Andy Grove> projection takes slice instead of vec 7e1a98f <Andy Grove> remove println and unwrap dddb7d7 <Andy Grove> update to use partition-aware changes from master 157512e <Andy Grove> Remove invalid TODO comment debb2fb <Andy Grove> code cleanup 6c3b7e2 <Andy Grove> add support for all primitive parquet types b4981ed <Andy Grove> implement more parquet column types and tests 5ce3086 <Andy Grove> revert to columnar reads c3f71d7 <Andy Grove> add integration test aea9f8a <Andy Grove> convert to use row iter f46e6f7 <Andy Grove> save eaddafb <Andy Grove> save 322fc87 <Andy Grove> add test for reading strings from parquet 3a412b1 <Andy Grove> first parquet test passes ff3e5b7 <Andy Grove> test 10710a2 <Andy Grove> Parquet datasource
andygrove
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Aug 17, 2019
This updates the language in `install_arrow()` to follow the README revision that will land in https://github.com/apache/arrow/pull/4948/files#diff-563b2cb2c8c2d51b2ff6b177e2d84286R33. The [Jira ticket](https://issues.apache.org/jira/browse/ARROW-6142) requested three things; this is `#2` in the list. On `#1`, I defer to the C++ installation docs, which are already included in the install_arrow message, rather than duplicating content here. `apache#3` is out of scope. Closes apache#5027 from nealrichardson/no-ppa and squashes the following commits: 80b142e <Neal Richardson> s/arrow/Arrow/ 44c9659 <Neal Richardson> Tweak language again 36cfe28 <Neal Richardson> Further linux install revisions 79bd7e0 <Neal Richardson> One more PPurge 63f75bd <Neal Richardson> Revise install_arrow instructions for Linux Authored-by: Neal Richardson <neal.p.richardson@gmail.com> Signed-off-by: Sutou Kouhei <kou@clear-code.com>
andygrove
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Feb 26, 2020
…comments. The reset method allow the data structures to be re-used so they don't have to be allocated over and over again. Closes apache#6430 from richardartoul/ra/merge-upstream and squashes the following commits: 5a08281 <Richard Artoul> Add license to test file d76be05 <Richard Artoul> Add test for data reset d102b1f <Richard Artoul> Add tests d3e6e67 <Richard Artoul> cleanup comments c8525ae <Richard Artoul> Add Reset method to int array (apache#5) 489ca25 <Richard Artoul> Fix array.setData() to retain before release (apache#4) 88cd05f <Richard Artoul> Add reset method to Data (apache#3) 6d1b277 <Richard Artoul> Add Reset() method to String array (#2) dca2303 <Richard Artoul> Add Reset method to buffer and cleanup comments (#1) Lead-authored-by: Richard Artoul <richard.artoul@datadoghq.com> Co-authored-by: Richard Artoul <richardartoul@gmail.com> Signed-off-by: Sebastien Binet <binet@cern.ch>
andygrove
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May 13, 2020
This PR enables tests for `ARROW_COMPUTE`, `ARROW_DATASET`, `ARROW_FILESYSTEM`, `ARROW_HDFS`, `ARROW_ORC`, and `ARROW_IPC` (default on). apache#7131 enabled a minimal set of tests as a starting point. I confirmed that these tests pass locally with the current master. In the current TravisCI environment, we cannot see this result due to a lot of error messages in `arrow-utility-test`. ``` $ git log | head -1 commit ed5f534 % ctest ... Start 1: arrow-array-test 1/51 Test #1: arrow-array-test ..................... Passed 4.62 sec Start 2: arrow-buffer-test 2/51 Test #2: arrow-buffer-test .................... Passed 0.14 sec Start 3: arrow-extension-type-test 3/51 Test apache#3: arrow-extension-type-test ............ Passed 0.12 sec Start 4: arrow-misc-test 4/51 Test apache#4: arrow-misc-test ...................... Passed 0.14 sec Start 5: arrow-public-api-test 5/51 Test apache#5: arrow-public-api-test ................ Passed 0.12 sec Start 6: arrow-scalar-test 6/51 Test apache#6: arrow-scalar-test .................... Passed 0.13 sec Start 7: arrow-type-test 7/51 Test apache#7: arrow-type-test ...................... Passed 0.14 sec Start 8: arrow-table-test 8/51 Test apache#8: arrow-table-test ..................... Passed 0.13 sec Start 9: arrow-tensor-test 9/51 Test apache#9: arrow-tensor-test .................... Passed 0.13 sec Start 10: arrow-sparse-tensor-test 10/51 Test apache#10: arrow-sparse-tensor-test ............. Passed 0.16 sec Start 11: arrow-stl-test 11/51 Test apache#11: arrow-stl-test ....................... Passed 0.12 sec Start 12: arrow-concatenate-test 12/51 Test apache#12: arrow-concatenate-test ............... Passed 0.53 sec Start 13: arrow-diff-test 13/51 Test apache#13: arrow-diff-test ...................... Passed 1.45 sec Start 14: arrow-c-bridge-test 14/51 Test apache#14: arrow-c-bridge-test .................. Passed 0.18 sec Start 15: arrow-io-buffered-test 15/51 Test apache#15: arrow-io-buffered-test ............... Passed 0.20 sec Start 16: arrow-io-compressed-test 16/51 Test apache#16: arrow-io-compressed-test ............. Passed 3.48 sec Start 17: arrow-io-file-test 17/51 Test apache#17: arrow-io-file-test ................... Passed 0.74 sec Start 18: arrow-io-hdfs-test 18/51 Test apache#18: arrow-io-hdfs-test ................... Passed 0.12 sec Start 19: arrow-io-memory-test 19/51 Test apache#19: arrow-io-memory-test ................. Passed 2.77 sec Start 20: arrow-utility-test 20/51 Test apache#20: arrow-utility-test ...................***Failed 5.65 sec Start 21: arrow-threading-utility-test 21/51 Test apache#21: arrow-threading-utility-test ......... Passed 1.34 sec Start 22: arrow-compute-compute-test 22/51 Test apache#22: arrow-compute-compute-test ........... Passed 0.13 sec Start 23: arrow-compute-boolean-test 23/51 Test apache#23: arrow-compute-boolean-test ........... Passed 0.15 sec Start 24: arrow-compute-cast-test 24/51 Test apache#24: arrow-compute-cast-test .............. Passed 0.22 sec Start 25: arrow-compute-hash-test 25/51 Test apache#25: arrow-compute-hash-test .............. Passed 2.61 sec Start 26: arrow-compute-isin-test 26/51 Test apache#26: arrow-compute-isin-test .............. Passed 0.81 sec Start 27: arrow-compute-match-test 27/51 Test apache#27: arrow-compute-match-test ............. Passed 0.40 sec Start 28: arrow-compute-sort-to-indices-test 28/51 Test apache#28: arrow-compute-sort-to-indices-test ... Passed 3.33 sec Start 29: arrow-compute-nth-to-indices-test 29/51 Test apache#29: arrow-compute-nth-to-indices-test .... Passed 1.51 sec Start 30: arrow-compute-util-internal-test 30/51 Test apache#30: arrow-compute-util-internal-test ..... Passed 0.13 sec Start 31: arrow-compute-add-test 31/51 Test apache#31: arrow-compute-add-test ............... Passed 0.12 sec Start 32: arrow-compute-aggregate-test 32/51 Test apache#32: arrow-compute-aggregate-test ......... Passed 14.70 sec Start 33: arrow-compute-compare-test 33/51 Test apache#33: arrow-compute-compare-test ........... Passed 7.96 sec Start 34: arrow-compute-take-test 34/51 Test apache#34: arrow-compute-take-test .............. Passed 4.80 sec Start 35: arrow-compute-filter-test 35/51 Test apache#35: arrow-compute-filter-test ............ Passed 8.23 sec Start 36: arrow-dataset-dataset-test 36/51 Test apache#36: arrow-dataset-dataset-test ........... Passed 0.25 sec Start 37: arrow-dataset-discovery-test 37/51 Test apache#37: arrow-dataset-discovery-test ......... Passed 0.13 sec Start 38: arrow-dataset-file-ipc-test 38/51 Test apache#38: arrow-dataset-file-ipc-test .......... Passed 0.21 sec Start 39: arrow-dataset-file-test 39/51 Test apache#39: arrow-dataset-file-test .............. Passed 0.12 sec Start 40: arrow-dataset-filter-test 40/51 Test apache#40: arrow-dataset-filter-test ............ Passed 0.16 sec Start 41: arrow-dataset-partition-test 41/51 Test apache#41: arrow-dataset-partition-test ......... Passed 0.13 sec Start 42: arrow-dataset-scanner-test 42/51 Test apache#42: arrow-dataset-scanner-test ........... Passed 0.20 sec Start 43: arrow-filesystem-test 43/51 Test apache#43: arrow-filesystem-test ................ Passed 1.62 sec Start 44: arrow-hdfs-test 44/51 Test apache#44: arrow-hdfs-test ...................... Passed 0.13 sec Start 45: arrow-feather-test 45/51 Test apache#45: arrow-feather-test ................... Passed 0.91 sec Start 46: arrow-ipc-read-write-test 46/51 Test apache#46: arrow-ipc-read-write-test ............ Passed 5.77 sec Start 47: arrow-ipc-json-simple-test 47/51 Test apache#47: arrow-ipc-json-simple-test ........... Passed 0.16 sec Start 48: arrow-ipc-json-test 48/51 Test apache#48: arrow-ipc-json-test .................. Passed 0.27 sec Start 49: arrow-json-integration-test 49/51 Test apache#49: arrow-json-integration-test .......... Passed 0.13 sec Start 50: arrow-json-test 50/51 Test apache#50: arrow-json-test ...................... Passed 0.26 sec Start 51: arrow-orc-adapter-test 51/51 Test apache#51: arrow-orc-adapter-test ............... Passed 1.92 sec 98% tests passed, 1 tests failed out of 51 Label Time Summary: arrow-tests = 27.38 sec (27 tests) arrow_compute = 45.11 sec (14 tests) arrow_dataset = 1.21 sec (7 tests) arrow_ipc = 6.20 sec (3 tests) unittest = 79.91 sec (51 tests) Total Test time (real) = 79.99 sec The following tests FAILED: 20 - arrow-utility-test (Failed) Errors while running CTest ``` Closes apache#7142 from kiszk/ARROW-8754 Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Signed-off-by: Sutou Kouhei <kou@clear-code.com>
andygrove
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May 13, 2020
…lure on big-endian platforms This PR gets an element data using an endianless API in Flatbuffer instead of getting a pointer. This can fix a failure of TestPlasmaSerialization.DeleteReply in plasma-serialization-tests. Without this PR ``` 1: [==========] Running 14 tests from 1 test case. 1: [----------] Global test environment set-up. 1: [----------] 14 tests from TestPlasmaSerialization 1: [ RUN ] TestPlasmaSerialization.CreateRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-kk8t88p9/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.CreateRequest (2 ms) 1: [ RUN ] TestPlasmaSerialization.CreateReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-97gspx5v/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.CreateReply (0 ms) 1: [ RUN ] TestPlasmaSerialization.SealRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-dkksx76p/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.SealRequest (1 ms) 1: [ RUN ] TestPlasmaSerialization.SealReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-oqbs9vm0/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.SealReply (0 ms) 1: [ RUN ] TestPlasmaSerialization.GetRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-d7q6h5q4/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.GetRequest (1 ms) 1: [ RUN ] TestPlasmaSerialization.GetReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-sxsncs72/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.GetReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.ReleaseRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-njc3g3b5/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.ReleaseRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.ReleaseReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-917ybxmo/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.ReleaseReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.DeleteRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-1kwauefv/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DeleteRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.DeleteReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-4ftq28pq/fileXXXXXX' 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:271: Failure 1: Value of: error_vec[0] == PlasmaError::ObjectExists 1: Actual: false 1: Expected: true 1: [ FAILED ] TestPlasmaSerialization.DeleteReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.EvictRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-vl97870w/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.EvictRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.EvictReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-3am9a6rv/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.EvictReply (1 ms) 1: [ RUN ] TestPlasmaSerialization.DataRequest 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-plye5tmm/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DataRequest (0 ms) 1: [ RUN ] TestPlasmaSerialization.DataReply 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma/test/serialization_tests.cc:87: file path: '/tmp/ser-test-mbu6lqsq/fileXXXXXX' 1: [ OK ] TestPlasmaSerialization.DataReply (1 ms) 1: [----------] 14 tests from TestPlasmaSerialization (9 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 14 tests from 1 test case ran. (9 ms total) 1: [ PASSED ] 13 tests. 1: [ FAILED ] 1 test, listed below: 1: [ FAILED ] TestPlasmaSerialization.DeleteReply 1: 1: 1 FAILED TEST 1: /home/ishizaki/Arrow/arrow/cpp/src/plasma 1/3 Test #1: plasma-serialization-tests .......***Failed 0.27 sec ... 3/3 Test apache#3: plasma-external-store-tests ...... Passed 0.46 sec ``` With this PR ``` $ ctest Test project /home/ishizaki/Arrow/arrow/cpp/src/plasma Start 1: plasma-serialization-tests 1/3 Test #1: plasma-serialization-tests ....... Passed 0.26 sec Start 2: plasma-client-tests 2/3 Test #2: plasma-client-tests .............. Passed 14.99 sec Start 3: plasma-external-store-tests 3/3 Test apache#3: plasma-external-store-tests ...... Passed 0.49 sec 100% tests passed, 0 tests failed out of 3 Label Time Summary: plasma-tests = 15.74 sec (3 tests) unittest = 15.74 sec (3 tests) Total Test time (real) = 15.74 sec ``` Closes apache#7148 from kiszk/ARROW-8759 Authored-by: Kazuaki Ishizaki <ishizaki@jp.ibm.com> Signed-off-by: Antoine Pitrou <antoine@python.org>
andygrove
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Apr 8, 2021
From a deadlocked run... ``` #0 0x00007f8a5d48dccd in __lll_lock_wait () from /lib64/libpthread.so.0 #1 0x00007f8a5d486f05 in pthread_mutex_lock () from /lib64/libpthread.so.0 #2 0x00007f8a566e7e89 in arrow::internal::FnOnce<void ()>::FnImpl<arrow::Future<Aws::Utils::Outcome<Aws::S3::Model::ListObjectsV2Result, Aws::S3::S3Error> >::Callback<arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler> >::invoke() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#3 0x00007f8a5650efa0 in arrow::FutureImpl::AddCallback(arrow::internal::FnOnce<void ()>) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#4 0x00007f8a566e67a9 in arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler::SpawnListObjectsV2() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#5 0x00007f8a566e723f in arrow::fs::(anonymous namespace)::TreeWalker::WalkChild(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#6 0x00007f8a566e827d in arrow::internal::FnOnce<void ()>::FnImpl<arrow::Future<Aws::Utils::Outcome<Aws::S3::Model::ListObjectsV2Result, Aws::S3::S3Error> >::Callback<arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler> >::invoke() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#7 0x00007f8a5650efa0 in arrow::FutureImpl::AddCallback(arrow::internal::FnOnce<void ()>) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#8 0x00007f8a566e67a9 in arrow::fs::(anonymous namespace)::TreeWalker::ListObjectsV2Handler::SpawnListObjectsV2() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#9 0x00007f8a566e723f in arrow::fs::(anonymous namespace)::TreeWalker::WalkChild(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, int) () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so apache#10 0x00007f8a566e74b1 in arrow::fs::(anonymous namespace)::TreeWalker::DoWalk() () from /arrow/r/check/arrow.Rcheck/arrow/libs/arrow.so ``` The callback `ListObjectsV2Handler` is being called recursively and the mutex is non-reentrant thus deadlock. To fix it I got rid of the mutex on `TreeWalker` by using `arrow::util::internal::TaskGroup` instead of manually tracking the #/status of in-flight requests. Closes apache#9842 from westonpace/bugfix/arrow-12040 Lead-authored-by: Weston Pace <weston.pace@gmail.com> Co-authored-by: Antoine Pitrou <antoine@python.org> Signed-off-by: Antoine Pitrou <antoine@python.org>
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Hi @andygrove, here's another small one. I've fixed the int96 reader to follow the Julian epoch way, and as a result the timestamp is now read correctly. Please see this notebook https://gist.github.com/nevi-me/574038fdec8e9c207f661813789d58fb for the Python output of the timestamps.
Here's verification of the first record: