Merge pull request #50 from andgoldschmidt/rtd

Upgrade some doc dependencies to allow build

.github/workflows/pull-docs.yml

@@ -7,8 +7,8 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ "3.9" ]
-        poetry-version: [ "1.2.1" ]
+        python-version: [ "3.11" ]
+        poetry-version: [ "1.8.3" ]
     steps:
       # ======
       # Checkout, set up python

.readthedocs.yaml

@@ -9,23 +9,15 @@ version: 2
 build:
   os: ubuntu-22.04
   tools:
-    python: "3.9"
-  jobs:
-    post_create_environment:
-      - pip install poetry==1.2.1
-      - poetry config virtualenvs.create false
-    post_install:
-      - poetry install -E docs
+    python: "3.11"
+
+python:
+  install:
+  - method: pip
+    path: .
+    extra_requirements:
+      - docs
 
 # Build documentation in the docs/ directory with Sphinx
 sphinx:
    configuration: docs/conf.py
-
-# If using Sphinx, optionally build your docs in additional formats such as PDF
-# formats:
-#    - pdf
-
-## Optionally declare the Python requirements required to build your docs
-#python:
-#   install:
-#   - requirements: docs/requirements.txt

pyproject.toml

@@ -1,3 +1,7 @@
+[build-system]
+requires = ["poetry-core>=1.1.0"]
+build-backend = "poetry.core.masonry.api"
+
 [tool.poetry]
 name = "derivative"
 version = "0.6.2"
@@ -16,30 +20,27 @@ readme = "README.rst"
 
 [tool.poetry.dependencies]
 python = "^3.9"
-numpy = "^1.18.3"
+numpy = ">=1.18.3"
 scipy = "^1.4.1"
 scikit-learn = "^1"
 importlib-metadata = "^7.1.0"
 
 # docs
-sphinx = {version = "^5", optional = true}
-nbsphinx = {version = "^0.6.1", optional = true}
-ipykernel = {version = "^5.2.1", optional = true}
-jupyter_client = {version = "^6.1.3", optional = true}
+sphinx = {version = "7.2.6", optional = true}
+nbsphinx = {version = "^0.9.5", optional = true}
 matplotlib = {version = "^3.2.1", optional = true}
-#pandoc = {version = "^2.2", optional = true}
+ipython = {version = "^8.0.0, !=8.7.0, !=8.18.1", optional = true}
+ipykernel = {version = "^6.0.0", optional = true}
+
 
 # dev
 asv = {version = "^0.6", optional = true}
-pytest = {version = "^7", optional = true}
+pytest = {version = ">=7", optional = true}
 
 [tool.poetry.extras]
-docs = ["sphinx", "nbsphinx", "ipykernel", "jupyter_client", "matplotlib", "pandoc"]
+docs = ["sphinx", "nbsphinx", "matplotlib", "ipython", "ipykernel"]
 dev = ["asv", "pytest"]
 
-[build-system]
-requires = ["poetry-core>=1.1.0"]
-build-backend = "poetry.core.masonry.api"
 
 [tool.poetry.plugins.'derivative.hyperparam_opt']
 "kalman.default" = "derivative.utils:_default_kalman"

tests/test_interface.py

@@ -5,6 +5,11 @@
 import numpy as np
 import inspect
 
+if int(np.__version__.split(".")[0]) == 1:
+    from numpy.polynomial.polyutils import RankWarning
+else:
+    from numpy.exceptions import RankWarning
+
 def test_register():
     # Check that every class is registered in methods
     class_list = inspect.getmembers(derivative.dlocal, inspect.isclass)\
@@ -89,7 +94,7 @@ def test_small():
 
     # savitzky_golay - RankWarning: The fit may be poorly conditioned if order >= points in window
     kwargs = {'left': 2, 'right': 2, 'iwindow': True, 'order': 2}
-    with pytest.warns(UserWarning): # numpy.RankWarning is of type UserWarning
+    with pytest.warns(RankWarning):
         assert two.shape == dxdt(two, two, kind='savitzky_golay', **kwargs).shape
     assert three.shape == dxdt(three, three, kind='savitzky_golay', **kwargs).shape