Code associated with the article Myokines in treatment-naïve patients with cancer-associated cachexia, Clinical Nutrition, 2020.
Cancer-associated cachexia is a complex metabolic syndrome characterized by weight loss and systemic inflammation. Muscle loss and fatty infiltration into muscle are associated with poor prognosis in cancer patients. Skeletal muscle secretes myokines, factors with autocrine, paracrine and/or endocrine action, which may be modified by or play a role in cachexia. This study examined myokine content in the plasma, skeletal muscle and tumor homogenates from treatment-naïve patients with gastric or colorectal stages I-IV cancer with cachexia (CC, N = 62), or not (weight stable cancer, WSC, N = 32). Myostatin, interleukin (IL) 15, follistatin-like protein 1 (FSTL-1), fatty acid binding protein 3 (FABP3), irisin and brain-derived neurotrophic factor (BDNF) protein content in samples was measured with Multiplex technology; body composition and muscle lipid infiltration were evaluated in computed tomography, and quantification of triacylglycerol (TAG) in the skeletal muscle. Cachectic patients presented lower muscle FSTL-1 expression (p = 0.047), higher FABP3 plasma content (p = 0.0301) and higher tumor tissue expression of FABP3 (p = 0.0182), IL-15 (p = 0.007) and irisin (p = 0.0110), compared to WSC. Neither muscle TAG content, nor muscle attenuation were different between weight stable and cachectic patients. Lumbar adipose tissue (AT) index, visceral AT index and subcutaneous AT index were lower in CC (p = 0.0149, p = 0.0455 and p = 0.0087, respectively), who also presented lower muscularity in the cohort (69.2% of patients; p = 0.0301), compared to WSC. The results indicate the myokine profile in skeletal muscle, plasma and tumor is impacted by cachexia. These findings show that myokines eventually affecting muscle wasting may not solely derive from the muscle itself (as the tumor also may contribute to the systemic scenario), and put forward new perspectives on cachexia treatment targeting myokines and associated receptors and pathways.
de Castro, Gabriela S., Joanna Correia-Lima, Estefania Simoes, Camila E. Orsso, Jingjie Xiao, Leonardo R. Gama*, Silvio P. Gomes, Daniela Caetano Gonçalves, Raquel G. F. Costa, Katrin Radloff, Ulrike Lenz, Anna E. Taranko, Fang Chia Bin, Fernanda B. Formiga, Louisie G. L. de Godoy, Rafael P. de Souza, Luis H. A. Nucci, Mario Feitoza, Claudio C. de Castro, Flavio Tokeshi, Paulo S. M. Alcantara, Jose P. Otoch, Alexandre F. Ramos*, Alessandro Laviano, Dario Coletti, Vera C. Mazurak, Carla M. Prado, and Marilia Seelaender. 2020. “Myokines in Treatment-Naïve Patients with Cancer-Associated Cachexia.” Clinical Nutrition. doi: 10.1016/j.clnu.2020.10.050.
(*) AMPhyBio Laboratory
- GNU R
- Pandoc
or
- RStudio
rmarkdownrprojroot- other packages are installed automatically if necessary
You can install all the dependencies with the command:
# apt install r-cran-{autoimage,corrplot,magrittr,rcolorbrewer,rmarkdown,rprojroot,readxl,tsne,vim}