Hotfix: Input folder is not deleted when running without split_wrt_ba…

…tches
aljpetri · Oct 30, 2024 · 3433364 · 3433364
1 parent da41cd0
commit 3433364
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/isONform_parallel b/isONform_parallel
@@ -296,7 +296,9 @@ def main(args):
     batch_merging_parallel.join_back_via_batch_merging(args.outfolder, args.delta, args.delta_len, args.delta_iso_len_3, args.delta_iso_len_5, args.max_seqs_to_spoa, args.iso_abundance, write_fastq, write_low_abundance)
     Parallelization_side_functions.generate_full_output(args.outfolder, write_fastq, write_low_abundance)
     Parallelization_side_functions.remove_folders(args.outfolder)
-    shutil.rmtree(split_directory)
+    if args.split_wrt_batches:
+        print("Removed the split directory")
+        shutil.rmtree(split_directory)
     print("Joined back batched files in:", time() - file_handling)
     print("Finished full algo after :", time() - globstart)
     return