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STAR_2.4.2a
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@alexdobin alexdobin released this 19 Jun 21:17
· 1044 commits to master since this release
STAR_2.4.2a
ff38b78

Major new feature:

  • --quantMode GeneCounts option for counting number of reads per gene, similar to htseq-count.

Bug fixes:

  • STARlong: fixed --outFilterIntronMotifs and --outSAMstrandField options.
  • Yet another fix for --sjdbOverhang logic.
  • Error message when shared memory and on the fly junction insertion are used together.
  • Fixed a bug causing unnecessary 1 base soft-clipping in rare cases with sparse suffix array.
  • Fixed a bug that caused problems with junction motifs in rare cases. Very few alignments affected, <1 per million.
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