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STAR 2.7.11a --- 2023/08/15 ::: STARdiploid
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@alexdobin alexdobin released this 15 Aug 19:31
· 8 commits to master since this release
2.7.11a
79affaa
  • Implemented STARdiploid option --genomeTransformType Diploid that generates personal diploid genome. At the mapping step, --genomeTransformOutput options will transform the alignments into reference genome coordinates.
  • Implemented --soloCBtype String option for arbitrary cell barcode strings without passlist.
  • Implemented STARsolo BAM tag sF, which outputs the feature type and number of genes for each read.
  • Fixed a GstrandBit issue for the on-the-fly insertion of extra genomic sequences.
  • Issue #1909: Fixed a bug causing wrong sequence length in the UB SAM tag for --soloType CB_UMI_Complex.
  • Issue #1871: Fixed a bug which occurs when --soloCellReadStats Standard --twopassMode Basic are used together.
  • Issue #1763: Fixed a bug causing segnmentation fault in rare cases for 2-pass mapping.
  • Issue #1733: Fixed the issue with counting of intronicAS reads in STARsolo CellReads.stats output with --soloFeatures GeneFull_Ex50pAS option.
  • Behavior change: for --wasp* ouput, the homozygous SNVs are filtered out from the VCF file.
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