header needed for python scipy mmread compatibility

[k3yavi]

No description provided.

[alexdobin]

Thanks a lot, Avi!

[k3yavi]

My pleasure, just one more thing which I was not able to figure out how to fix.
The file which contains the gene names order (as per the matrix) seems to off by a new line or something? If I use the binary in the master branch, it seems to be giving lower-half of the file as blank and the upper half as jumbled up gene names.

[alexdobin]

Hi Avi,

there was issue #556 reporting the same probem, and I think I fixed it in the latest patch on master - please try it out. I will make a tagged release tomorrow.

Cheers
Alex

[k3yavi]

Thanks @alexdobin for the heads up, looking forward to it.

[zhangguy]

Hi @alexdobin
The cellranger matrix.mtx file is space delimited while the STARsolo matrix.mtx is tab delimited. This makes Suerat unable to load. Could you also modify this?
Thanks.

[alexdobin]

Hi @zhangguy

I have changed from tabs to spaces, please try the latest patch on Github master.
I will tag 2.7.0c tomorrow.

Cheers
Alex

[zhangguy]

Hi @alexdobin
Thanks for the quick fix for the tab delimit issue. The binary in the main branch is working.

However there is another issue as pointed out by @k3yavi , the first line of genes.tsv is empty. If I read into Seurat using the Read10X function it'll make the first gene name as NA. Do you think the gene names are shifted by one? Thanks.

[xxxxxx Solo.out]$ more genes.tsv 
	
ENSG00000223972.5	DDX11L1
ENSG00000227232.5	WASH7P
ENSG00000278267.1	MIR6859-1
ENSG00000243485.5	RP11-34P13.3
ENSG00000284332.1	MIR1302-2

[alexdobin]

Hi @zhangguy

thanks for reporting this bug, I fixed it please check the GitHub master again.
Hopefully, will tag 2.7.0c tomorrow.

Cheers
Alex

[zhangguy]

Hi @alexdobin
Worked. Lightning fast.
Cheers,
zhangguy