Run snakefmt

snakedwi/workflow/Snakefile

@@ -26,9 +26,9 @@ include: "rules/diffusion/sdc/synthsr.smk"
 include: "rules/diffusion/eddy.smk"
 include: "rules/diffusion/reg_dwi_to_t1.smk"
 include: "rules/diffusion/bedpost.smk"
-
 include: "rules/qc_app.smk"
 
+
 # Currently unused
 # include: rules/other.smk
 # include: rules/templateflow.smk
@@ -44,7 +44,6 @@ if config["use_eddy_s2v"] and not config["use_eddy_gpu"]:
     sys.exit(1)
 
 
-
 rule all:
     input:
         **get_eddy_quad_all(),

snakedwi/workflow/rules/diffusion/reg_dwi_to_t1.smk

@@ -191,7 +191,6 @@ rule compile_qc_reg_dwi_t1_manifest:
             )
 
 
-
 rule convert_xfm_ras2itk:
     input:
         xfm_ras=rules.reg_dwi_to_t1.output.xfm_ras,

snakedwi/workflow/rules/qc_app.smk

@@ -3,7 +3,7 @@ rule qc:
         mask_qc=rules.compile_qc_b0_brainmask_manifest.output[0],
         reg_qc=rules.compile_qc_reg_dwi_t1_manifest.output[0],
     output:
-        os.path.join(qc, "data.json")
+        os.path.join(qc, "data.json"),
     run:
         with open(output[0], "w") as f:
             json.dump(
@@ -14,19 +14,25 @@ rule qc:
                 f,
             )
 
+
 _qc_app = os.path.join(workflow.basedir, "..", "resources", "qc-app.tar.gz")
+
+
 def _get_tar_contents(file):
     try:
         return [
             p
             for p in sp.check_output(["tar", "-tf", _qc_app]).decode().splitlines()
-            if p[-1] != '/'
+            if p[-1] != "/"
         ]
     except sp.CalledProcessError as err:
         raise Exception("Unable to find qc-app.tar.gz...") from err
 
+
 rule unpack_qc_app:
-    input: os.path.join(workflow.basedir, "..", "resources", "qc-app.tar.gz")
-    output: _get_tar_contents(_qc_app)
+    input:
+        os.path.join(workflow.basedir, "..", "resources", "qc-app.tar.gz"),
+    output:
+        _get_tar_contents(_qc_app),
     shell:
-        "tar -xvzf {input}"
+        "tar -xvzf {input}"