DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative properties

Zhenyu Weng, Zongliang Yue, Yuesheng Zhu*, Jake Yue Chen*

1 Communication and Information Security Lab, Institute of Big Data Technologies, Shenzhen Graduate School, Peking University, China

2 Informatics Institute, School of Medicine, University of Alabama at Birmingham, USA

* jakechen@uab.edu, zhuys@pku.edu.cn

Tutorial video: https://youtu.be/N9EhWbZGSg4

mdsj is a library for mds

sample-custom-layout-1.0 is DEMA version 1.0