Fix errors within example code for data sources

aehrc · Dec 19, 2023 · 4cd3a28 · 4cd3a28
1 parent e9210a0
commit 4cd3a28
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Showing 4 changed files with 6 additions and 9 deletions.
diff --git a/.gitignore b/.gitignore
@@ -36,3 +36,4 @@ spark-warehouse
 
 .Rproj.user
 /lib/R/pathlyr/.Rhistory
+*.Rcheck
diff --git a/lib/R/.gitignore b/lib/R/.gitignore
@@ -2,4 +2,3 @@ man/*.Rd
 NAMESPACE
 DESCRIPTION
 tests/testthat/testdata
-*.Rcheck
diff --git a/lib/R/R/datasource.R b/lib/R/R/datasource.R
@@ -258,7 +258,7 @@ invoke_datasink <- function(ds, name, ...) {
 #' @seealso \href{https://pathling.csiro.au/docs/libraries/fhirpath-query#ndjson-1}{Pathling documentation - Writing NDJSON}
 #' 
 #' @examplesIf pathling_is_spark_installed()
-#' pc <- pathling_connect(sc)
+#' pc <- pathling_connect()
 #' data_source <- pc %>% pathling_read_ndjson(pathling_examples('ndjson'))
 #' 
 #' # Write the data to a directory of NDJSON files.
@@ -287,7 +287,7 @@ ds_write_ndjson <- function(ds, path, file_name_mapper = NULL) {
 #' @seealso \href{https://pathling.csiro.au/docs/libraries/fhirpath-query#parquet-1}{Pathling documentation - Writing Parquet}
 #' 
 #' @examplesIf pathling_is_spark_installed()
-#' pc <- pathling_connect(sc)
+#' pc <- pathling_connect()
 #' data_source <- pc %>% pathling_read_ndjson(pathling_examples('ndjson'))
 #' 
 #' # Write the data to a directory of Parquet files.
@@ -318,7 +318,7 @@ ds_write_parquet <- function(ds, path) {
 #' @seealso \code{\link{ImportMode}}
 #' 
 #' @examplesIf pathling_is_spark_installed()
-#' pc <- pathling_connect(sc)
+#' pc <- pathling_connect()
 #' data_source <- pc %>% pathling_read_ndjson(pathling_examples('ndjson'))
 #' 
 #' # Write the data to a directory of Delta files.

diff --git a/lib/R/pom.xml b/lib/R/pom.xml
@@ -282,11 +282,8 @@
               <workingDirectory>${project.basedir}</workingDirectory>
               <arguments>
                 <argument>CMD</argument>
-                <argument>INSTALL</argument>
-                <argument>--preclean</argument>
-                <argument>--no-multiarch</argument>
-                <argument>--with-keep.source</argument>
-                <argument>.</argument>
+                <argument>install</argument>
+                <argument>target/${pathling.Rapi.packageName}_${pathling.Rapi.version}.tar.gz</argument>
               </arguments>
             </configuration>
           </execution>
Original file line number	Diff line number	Diff line change
Expand Up		@@ -36,3 +36,4 @@ spark-warehouse

		.Rproj.user
		/lib/R/pathlyr/.Rhistory
		*.Rcheck