Error on missing acq time

aces · Oct 19, 2021 · 43ab615 · 43ab615
1 parent 3e3a196
commit 43ab615
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Showing 2 changed files with 10 additions and 3 deletions.
diff --git a/python/bids_import.py b/python/bids_import.py
@@ -212,7 +212,13 @@ def read_and_insert_bids(bids_dir, config_file, verbose, createcand, createvisit
                 scan_data.to_df()
                 for scan_data in bids_reader.bids_layout.get_collections('session', 'scans')
             ])
-            visit_date = min(scans_data['acq_time'])
+
+            if len(scans_data.get('acq_time')) == 0:
+                message = '\n\tERROR: Can\'t find scans acquisition time data'
+                print(message)
+                sys.exit(lib.exitcode.BIDS_SCANS_ACQ_TIME_MISSING)
+
+            visit_date = min(scans_data.get('acq_time'))
 
         # greps BIDS session's info for the candidate from LORIS
         # Creates the session if it does not exist yet in LORIS and createvisit is set to true.

diff --git a/python/lib/exitcode.py b/python/lib/exitcode.py
@@ -47,5 +47,6 @@
 UNKNOWN_PROTOCOL          = 84  # if unknown acq protocol for the file to insert
 
 
-CANDIDATE_MISMATCH      = 181
-BIDS_CANDIDATE_MISMATCH = 182
+CANDIDATE_MISMATCH          = 181
+BIDS_CANDIDATE_MISMATCH     = 182
+BIDS_SCANS_ACQ_TIME_MISSING = 183