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@a-ludi a-ludi released this 22 Sep 19:13
· 8 commits to develop since this release
v4.0.0
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a-ludi Arne
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Learn about vigilant mode.

[4.0.0] - 2022-09-02

Added

  • include GIT commit in logs
  • script to generate report on closed and unclosed gaps
  • script mask2bed that converts Dazzler masks to BED files
  • JSON schema for config file
  • debugging output to track down issue #31

Changed

  • preserve original scaffold headers in output FASTA
  • ensure unique scaffold IDs in output
  • output FASTA names/coords in AGP
  • parallelized alignment filters
  • fail early measure against bug in libmaus2

Fixed

  • added missing Python installation to Singularity image
  • treat long FASTA lines graciously
  • fixed rule validate_dentist_config
  • fixed install instructions Snakemake profile
  • fixed bug with newer versions of Snakemake
  • include Python files in GIT repo
  • close open LAS file asap
  • fixed JSON conversion of AlignmentChain
  • workaround for Phobos v2.099.0 bug
  • fixed compiler error
  • treat compiler warning
Assets 5
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