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ZJUFanLab authored Apr 12, 2020
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# Updated scCATCH 2.0
[![R >3.5](https://img.shields.io/badge/R-%3E3.5-brightgreen.svg)](https://www.r-project.org/) <a href='#devtools'>![installed with devtools](https://img.shields.io/badge/installed%20with-devtools-blue.svg)</a> [![source package scCATCH__2.0.tar.gz](https://img.shields.io/badge/source%20package-scCATCH__2.0.tar.gz-yellowgreen.svg)](https://github.com/ZJUFanLab/scCATCH_performance_comparison/blob/master/scCATCH_2.0.tar.gz)
[![R >3.5](https://img.shields.io/badge/R-%3E3.5-brightgreen.svg)](https://www.r-project.org/) <a href='#devtools'>![installed with devtools](https://img.shields.io/badge/installed%20with-devtools-blue.svg)</a>

### Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

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<font size = 3>2. scCATCH can also be used to annotate scRNA-seq data from __tissue with cancer.__</font>

# Install
`devtools::install_github('ZJUFanLab/scCATCH')`
[![source package scCATCH__2.0.tar.gz](https://img.shields.io/badge/source%20package-scCATCH__2.0.tar.gz-yellowgreen.svg)](https://github.com/ZJUFanLab/scCATCH_performance_comparison/blob/master/scCATCH_2.0.tar.gz)

```
# download the source package of scCATCH_2.0.tar.gz and install it
install.packages(pkgs = 'scCATCH_2.0.tar.gz')
```

or

```
# install devtools and install scCATCH
install.packages(pkgs = 'devtools')
devtools::install_github('ZJUFanLab/scCATCH')
```

# Usage

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