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Update metadata regular expression in analysis.cppipe files #57

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jenna-tomkinson opened this issue Jan 23, 2025 · 0 comments
Open

Update metadata regular expression in analysis.cppipe files #57

jenna-tomkinson opened this issue Jan 23, 2025 · 0 comments

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@jenna-tomkinson
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Due to hardcoding the regular expression, Plate 6 did not have plate metadata extracted properly.
The regular expression should be updated and Plate 6 reran so that the plate metadata is extracted correctly starting from the source.
jenna-tomkinson added a commit to jenna-tomkinson/nf1_schwann_cell_painting_data that referenced this issue Jan 23, 2025
@jenna-tomkinson
first part fix for issue: Update metadata regular expression in analy…
6d898c2 
…sis.cppipe files WayScience#57
@jenna-tomkinson jenna-tomkinson mentioned this issue Jan 23, 2025
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jenna-tomkinson added a commit that referenced this issue Jan 27, 2025
@jenna-tomkinson
Update plate 6 samples (#55)
89ead36 
* update plate 6 normalize

* add more print statements

* update environments after bug fix

* first part fix for issue: Update metadata regular expression in analysis.cppipe files #57

* rerun preprocessing for plate 6

* update bulk pipeline to reflect sc and rerun for relevant plates
@jenna-tomkinson jenna-tomkinson mentioned this issue Jan 28, 2025
Merged
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@jenna-tomkinson