Internal testing prior to Pathosphere release

Internal testing at WRAIR prior to releasing v4.1

v4.1.0-beta

This release is intended for testing internally at WRAIR

This release introduces a few new features as well as a much more completed documentation that can be expanded on in the future.

New Features:

• make_summary
  This script pulls together various data from each supplied project and creates a unified report that can be viewed in your favorite spreadsheet program.
• make_pie
  This script generates a really nice graphic that shows Host, Vector, Pathogen and Total Sample Composition
• Much improved documentation that breaks down all stages of the pipeline as well as installation and database setup

Version 4.1.0

This release introduces a few new features as well as a much more completed documentation that can be expanded on in the future.

New Features:

• make_summary
  This script pulls together various data from each supplied project and creates a unified report that can be viewed in your favorite spreadsheet program.
• make_pie
  This script generates a really nice graphic that shows Host, Vector, Pathogen and Total Sample Composition
• Much improved documentation that breaks down all stages of the pipeline as well as installation and database setup

Initial release

First release of Pathogen Discovery pipeline. We have added the following features:

1. Download and install all dependencies required for the pipeline
2. Added the quality matrix of the sequencing lanes using fastqc
3. Added a routine to check where it fails in case something went wrong
4. Designed the application using fragmented tasks for easy upgrade.
5. Auto configure all parameters with limited manual involvement

Exclude the EMBOSS binary and attached it.

Excluded the big file and attached it.