This repository is an Example using GitHub Actions [egge] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-09-29 00:51:21.
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Role of Vaccination Strategies to Host-Pathogen Dynamics in Social Interactions.
Gonzaga MN, de Oliveira MM, Atman APF.
Entropy (Basel). 2024 Aug 30;26(9):739. doi: 10.3390/e26090739.
This study presents extended Immunity Agent-Based Model (IABM) simulations to evaluate vaccination strategies in controlling the spread of infectious diseases. …
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Agent-based evolutionary game dynamics uncover the dual role of resource heterogeneity in the evolution of cooperation.
Yang Q, Tang Y, Gao D.
J Theor Biol. 2024 Sep 23:111952. doi: 10.1016/j.jtbi.2024.111952. Online ahead of print.
However, little is known about the underlying evolutionary drivers behind this phenomenon. Leveraging agent-based modeling and game theory, we explore how differences in resource availability across environments influence the evolution of cooperation. …
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Prediction of sperm motion behavior in microfluidic channel using sperm swimming model.
Hyakutake T, Higashiyama D, Tsuchiya T.
J Biomech. 2024 Sep 20;176:112336. doi: 10.1016/j.jbiomech.2024.112336. Online ahead of print.
In this study, we constructed a sperm swimming model based on the concept of an agent-based model. This model allows analysis at the same spatio-temporal scale similar to microfluidic channels. …Using these models, we investigated sperm …
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Accuracy, rationality and specialization in a generalized model of collective navigation.
Mann RP, Bailey JD, Codling EA.
J R Soc Interface. 2024 Sep;21(218):20240207. doi: 10.1098/rsif.2024.0207. Epub 2024 Sep 25.
Within groups, individuals may improve their navigational accuracy by following those with more experience or knowledge, by pooling information from many directional estimates (‘many wrongs’) or some combination of these strategies. Previous agent-based simulations …
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Health impact, budget impact, and price threshold for cost-effectiveness of lenacapavir for HIV pre-exposure prophylaxis in eastern and southern Africa: a modelling analysis.
Wu L, Kaftan D, Wittenauer R, Arrouzet C, Patel N, Saravis AL, Pfau B, Mudimu E, Bershteyn A, Sharma M.
Lancet HIV. 2024 Sep 20:S2352-3018(24)00239-X. doi: 10.1016/S2352-3018(24)00239-X. Online ahead of print.
We aimed to estimate the health and budget impacts and threshold price at which lenacapavir could be cost-effective in eastern and southern Africa. METHODS: We adapted an agent-based network model, EMOD-HIV, to simulate lenacapavir scale-up in Zimbabwe, South …
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Molecular Photoswitching Unlocks Glucose Oxidase for Synergistically Reinforcing Fenton Reactions for Antitumor Chemodynamic Therapy.
Tian Z, Wang Z, Bao W, Wujieti B, Liu M, Li X, Ma Z, Cui W.
Angew Chem Int Ed Engl. 2024 Sep 23:e202413633. doi: 10.1002/anie.202413633. Online ahead of print.
The antitumor potency of such nanoparticle is verified in tumor-bearing model mice in vivo, proclaiming its potential as a potent and safe agent based on the unique mechanism of optically manipulating enzyme activity for synergistic antitumor therapeutics wit …
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Quantum Markov blankets for meta-learned classical inferential paradoxes with suboptimal free energy.
Clark KB.
Behav Brain Sci. 2024 Sep 23;47:e150. doi: 10.1017/S0140525X24000244.
Quantum active Bayesian inference and quantum Markov blankets enable robust modeling and simulation of difficult-to-render natural agent-based classical inferential paradoxes interfaced with task-specific environments. …
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Forecasting and Predicting Stochastic Agent-Based Model Data with Biologically-Informed Neural Networks.
Nardini JT.
Bull Math Biol. 2024 Sep 23;86(11):130. doi: 10.1007/s11538-024-01357-2.
Collective migration is an important component of many biological processes, including wound healing, tumorigenesis, and embryo development. Spatial agent-based models (ABMs) are often used to model collective migration, but it is challenging to thorou …
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Incorporating Social Determinants of Health in Infectious Disease Models: A Systematic Review of Guidelines.
Ali S, Li Z, Moqueet N, Moghadas SM, Galvani AP, Cooper LA, Stranges S, Haworth-Brockman M, Pinto AD, Asaria M, Champredon D, Hamilton D, Moulin M, John-Baptiste AA.
Med Decis Making. 2024 Sep 21:272989X241280611. doi: 10.1177/0272989X241280611. Online ahead of print.
BACKGROUND: Infectious disease (ID) models have been the backbone of policy decisions during the COVID-19 pandemic. However, models often overlook variation in disease risk, health burden, and policy impact across social groups. …METHODS: To underscore the importa …
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Revisiting the impact of Schistosoma mansoni regulating mechanisms on transmission dynamics using SchiSTOP, a novel modelling framework.
Malizia V, de Vlas SJ, Roes KCB, Giardina F.
PLoS Negl Trop Dis. 2024 Sep 20;18(9):e0012464. doi: 10.1371/journal.pntd.0012464. eCollection 2024 Sep.
METHODOLOGY/PRINCIPAL FINDINGS: We developed SchiSTOP: a hybrid stochastic agent-based and deterministic modelling framework for S. mansoni transmission in an age-structured human population. …However, the predicted probability of reaching the control targe …
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