Typhoid vignette #9
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Loaded datasets and began updating explanatory text.
vignettes/typhoid-seroincidence.Rmd
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| ##Load simulated data (lambda = .2) and prepare for model | ||
| The simulated data are assuming a force of infection (FOI, *lambda*) of 0.2. We have selected hlye and IgG as our target measures. From the original dataset, we rename our variables to ______. Finally, we once again limit the dataset to only the variables needed for the analysis. | ||
| ``` {r simdata} | ||
| p.hlye.IgG <- read_csv("simpophlyeigg.2.csv") %>% |
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I think the checks are currently failing due to this line; fix a la https://r-pkgs.org/data.html#sec-data-system-file ?
vignettes/installation.Rmd
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| @@ -127,19 +127,19 @@ by executing one of the following commands in the *R console*: | |||
| ```{r, include=FALSE, tidy=FALSE} | |||
| chunkTemplate <- "```{r, eval = FALSE} | |||
| # OPTION A | |||
| # Install Windows binary package \"seroincidence\" directly from internet ECDC website: | |||
| # Install Windows binary package \"serocalculator\" directly from internet ECDC website: | |||
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this option should be changed to point to github instead of ECDC
README.md
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| **A Note for Windows Users** | ||
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| Windows users will need to install Rtools, which contains a collection of tools for building and employing R packages that are still in development. |
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Did the version of Rtools installed by devtools not work? I can't remember what happened with that.
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@kristinawlai I pushed some commits to the |
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@d-morrison The changes are too complex to resolve in the web editor, so I can't see what to edit. Can you show me how to do this via command line or other best way to do this? We can discuss on our call. |
Updated typhoid vignette data loading and started updating explanatory text.