Code

possible fix for typhoid vignette#26

Code

Merged

kristinawlai merged 62 commits intotyphoid_vignetteUCD-SERG/serocalculator:typhoid_vignettefrom typhoid_vignette_patch_11-11UCD-SERG/serocalculator:typhoid_vignette_patch_11-11Copy head branch name to clipboardNov 14, 2023

+2,069-871

Commits

Commits on Oct 25, 2023

• Merge pull request #19 from UCD-SERG/typhoid_vignette

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• setting up test of estIncidence() function

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• fix note on test

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• in progress

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Commits on Oct 27, 2023

• more cleanup

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• in progress

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• in progress

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• update docs

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• tutorial wont run until inputs are updated to match new method

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• import rename

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• use dplyr

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Commits on Nov 1, 2023

• cleanup

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Commits on Nov 2, 2023

• formatting

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Commits on Nov 7, 2023

• getting close to functional

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• more

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• more

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• cleaning up

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• more

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• inconsistent results

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• seems to work!

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• dealing with load_all()

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• correct typo

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• cleanup

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• rename

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• more

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  10c9b28

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• more fixes

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• fix typo in documentation

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• lots of stuff

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• more polishing

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Commits on Nov 8, 2023

• small change to output

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• Merge pull request #22 from UCD-SERG/ka_mini

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• clearing up some check errors

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• Merge branch 'refactor' of https://github.com/UCD-SERG/serocalculator into refactor

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• fix data

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• cleanup

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Commits on Nov 9, 2023

• more

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• more cleanup

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• posit-cloud edits

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• ignore temp files

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• ignore some large files when building

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• need bookdown for bookdown::html_document2

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• skipping test

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• turning off evaluation of sees-analysis for now.

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• I think this might work

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• polished

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• Merge pull request #23 from UCD-SERG/redo-stratified-analysis

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• more cleanup

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• correcting one more dplyr "global variable" note.

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• dont need documentation for sees data yet

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• Merge pull request #20 from UCD-SERG/refactor

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• add n, fixed antigen_isos bug

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• Merge pull request #24 from UCD-SERG/scrub-vignette

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• require dplyr version 1.1.1 or higher, to use the relationship argument.

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Commits on Nov 12, 2023

• Merge branch 'typhoid_vignette' into typhoid_vignette_patch_11-11

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Commits on Nov 13, 2023

• add stepmax, and a little documentation

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• cleanup of documentation

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• Merge pull request #25 from UCD-SERG/dplyr-version-req

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• more fixes to documentation

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• Merge pull request #27 from UCD-SERG/set-stepmax

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• Merge remote-tracking branch 'origin/main' into typhoid_vignette_patch_11-11

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Commits on Nov 14, 2023

• rename to remove spaces

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• purge one more filename space

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