refactor code to match new maven-based project structure #815
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This commit adds all necessary files as well as correctly specifies the package names for each file. The project now fully mimics maven's project structure (as indicated as a goal earlier in issue #474).
The goal is to make working on the project easier for others. They can now clone the repo and use the
Open as maven project
that is included in every mainstream IDE/editor.**Edit: ** All tests pass. Might be a good idea to setup a Travis CI config that will check for tests.