Some patches to the DB + a bugfix on a date

[priesgo]

• Patch to remove mutations at begjnning and end of the genome Filter out indels at ends of genome (especially relevant for FASTAs... use homoplasmic regions from DeMaio) covigator-ngs-pipeline#41
• Patch to set the right collection date in the variant observations table

Makes sure that Variant Observations table hold the collection date from the corresponding sample

[codecov]

Codecov Report

Base: 83.00% // Head: 83.00% // No change to project coverage 👍

Coverage data is based on head (3f301d7) compared to base (53fcae2).
Patch has no changes to coverable lines.

Additional details and impacted files

@@           Coverage Diff            @@
##           develop      #78   +/-   ##
========================================
  Coverage    83.00%   83.00%           
========================================
  Files           46       46           
  Lines         4173     4173           
========================================
  Hits          3464     3464           
  Misses         709      709           

Impacted Files	Coverage Δ
covigator/pipeline/vcf_loader.py	94.82% <ø> (ø)

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