Merge pull request #35 from TRON-Bioinformatics/develop

fix CLI for cooccurrence
TRON-Bioinformatics · Jun 4, 2022 · f915544 · f915544
2 parents d337730 + ee79fd5
commit f915544
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/covigator/__init__.py b/covigator/__init__.py
@@ -1,4 +1,4 @@
-VERSION = "v0.7.0"
+VERSION = "v0.7.1"
 ANALYSIS_PIPELINE_VERSION = "v0.9.3"
 
 MISSENSE_VARIANT = "missense_variant"

diff --git a/covigator/command_line.py b/covigator/command_line.py
@@ -193,5 +193,5 @@ def cooccurrence():
     database = Database(initialize=True, config=Configuration())
     loader = CooccurrenceMatrixLoader(session=database.get_database_session())
     logger.info("Starting precomputation...")
-    loader.load(data_source=args.data_source, maximum_length=args.maximum_length)
+    loader.load(data_source=args.data_source, maximum_length=int(args.maximum_length))
     logger.info("Done precomputing")