Merge pull request #318 from Steinbeck-Lab/dev-nisha #219
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| # This worklflow will perform following actions when the code is pushed to development branch: | |
| # - Test linting with pylint. | |
| # - Fetch Latest release. | |
| # - Build the latest docker image in development which needs test to pass first. | |
| # - Push the docker image to Github Artifact Registry-Dev. | |
| # | |
| # Maintainers: | |
| # - name: Nisha Sharma | |
| # - email: nisha.sharma@uni-jena.de | |
| name : Dev Build, Test and Publish | |
| on: | |
| push: | |
| branches: [development] | |
| env: | |
| DOCKER_HUB_USERNAME : ${{ secrets.DOCKER_USERNAME }} | |
| DOCKER_HUB_PASSWORD : ${{ secrets.DOCKER_PASSWORD }} | |
| REPOSITORY_NAME: cheminformatics-python-microservice | |
| REPOSITORY_NAMESPACE: caffeinejena | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip3 install --upgrade setuptools pip | |
| pip3 install --no-cache-dir -r requirements.txt | |
| pip3 install rdkit | |
| python3 -m pip uninstall -y imantics | |
| pip3 install imantics==0.1.12 | |
| pip3 install openbabel-wheel | |
| pip3 install --no-deps decimer-segmentation | |
| pip3 install --no-deps decimer>=2.2.0 | |
| pip3 install --no-deps STOUT-pypi>=2.0.5 | |
| pip install flake8 pytest | |
| - name: Analysing the code with pylint | |
| run: | | |
| flake8 --per-file-ignores="__init__.py:F401" --ignore E402,E501,W503 $(git ls-files '*.py') . | |
| - name: Run test | |
| run: | | |
| python3 -m pytest -p no:warnings | |
| push_to_registry: | |
| name: Push Docker image to Docker Hub | |
| runs-on: ubuntu-latest | |
| needs: test | |
| steps: | |
| - name: Check out the repo | |
| uses: actions/checkout@v3 | |
| - name: Log in to Docker Hub | |
| uses: docker/login-action@f4ef78c080cd8ba55a85445d5b36e214a81df20a | |
| with: | |
| username: ${{ env.DOCKER_HUB_USERNAME }} | |
| password: ${{ env.DOCKER_HUB_PASSWORD }} | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| file: ./Dockerfile | |
| push: true | |
| build-args: | | |
| RELEASE_VERSION=dev-latest | |
| tags: ${{ env.REPOSITORY_NAMESPACE }}/${{ env.REPOSITORY_NAME }}:dev-latest | |
| username: ${{ env.DOCKER_HUB_USERNAME }} | |
| password: ${{ env.DOCKER_HUB_PASSWORD }} |