HELP REQUIRED

We have no more time to finish this plugin. Any help would be really appreciated. Feel free to contact us!

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PPiMapBuilder

PPiMapBuilder is a Cytoscape 3 app for protein-protein interaction network generation and protein-protein interaction prediction via the Phylogenetic profiling method as described by:

Echeverría PC, Bernthaler A, Dupuis P, Mayer B, Picard D (2011) An interaction network predicted from public data as a discovery tool: application to the Hsp90 molecular chaperone machine. PLoS One 6: e26044.doi:10.1371/journal.pone.0026044.

PPiMapBuilder uses PSICQUIC services to retrieve interaction data, InParanoid 8 for protein orthology and UniProt for protein data.

This project was initiated by Pablo Echeverría from as a bio-informatic master student project.

To get more details about this Cytoscape 3 app, you can check the wiki.

Installation

From release

1. Download the lastest PPiMapBuilder release
2. Install PPiMapBuilder-X.X.jar

• Within Cytoscape:
  • Go to Apps>App Manager
  • Click Install from file
  • Select the PPiMapBuilder jar file

OR

• Manually:
  • Move the PPiMapBuilder jar file to <USER_DIRECTORY>/CytoscapeConfiguration/3/apps/installed/

From source code

1. Clone this git repository or download source
2. Run mvn install in the PPiMapBuilder folder
3. Install ./target/PPiMapBuilder-X.X.jar

• Within Cytoscape:
  • Go to Apps>App Manager
  • Click Install from file
  • Select the PPiMapBuilder jar file

OR

• Manually:
  • Move the PPiMapBuilder jar file to <USER_DIRECTORY>/CytoscapeConfiguration/3/apps/installed/

Reference webservices used

PSICQUIC