This release removes all MutMap related analyses since it caused several bugs.
Instead, the pipeline now mainly outputs a GATK table of variants compatible with QTLseqR. This facilitates downstream filtering and QTL calls.
This release removes all MutMap related analyses since it caused several bugs.
Instead, the pipeline now mainly outputs a GATK table of variants compatible with QTLseqR. This facilitates downstream filtering and QTL calls.