Update to version 0.1.2

Selbosh · Jul 19, 2021 · 948c7c9 · 948c7c9
2 parents 010126b + 5b4e58a
commit 948c7c9
Show file tree

Hide file tree

Showing 5 changed files with 19 additions and 8 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: doseminer
 Type: Package
 Title: Extract Drug Dosages from Free-Text Prescriptions
-Version: 0.1.1
+Version: 0.1.2
 Authors@R:
   c(person(given = 'David',
            family = 'Selby',
@@ -13,11 +13,11 @@ Authors@R:
            email = 'belaybirlie.yimer@manchester.ac.uk',
            role = 'ctb'),
     person(given = 'Ben',
-          family = 'Marwick',
-          email = 'benmarwick@gmail.com',
-          role = 'ctb'))
-Maintainer: David Selby <david.selby@manchester.ac.uk>
+           family = 'Marwick',
+           email = 'benmarwick@gmail.com',
+           role = 'ctb'))
 Description: Utilities for converting unstructured electronic prescribing instructions into structured medication data. Extracts drug dose, units, daily dosing frequency and intervals from English-language prescriptions. Based on Karystianis et al. (2015) <doi:10.1186/s12911-016-0255-x>.
+BugReports: https://github.com/Selbosh/doseminer/issues
 License: MIT + file LICENSE
 Encoding: UTF-8
 LazyData: true

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# doseminer 0.1.2
+
+* Remove the `output` column (only used for debugging) from the output of `extract_from_prescription`
+
 # doseminer 0.1.1
 
 * Fixed implicit coercion of strings to factors in `extract_from_prescription`, which caused some unit tests to fail on older versions of R (< 4.0.0).

diff --git a/R/extract.R b/R/extract.R
@@ -152,7 +152,7 @@ extract_from_prescription <- function(txt) {
 
   unit <- extract_dose_unit(output)
 
-  data.frame(raw = txt, output, freq, itvl, dose, unit, optional,
+  data.frame(raw = txt, freq, itvl, dose, unit, optional,
              stringsAsFactors = FALSE)
 }
 

diff --git a/man/doseminer-package.Rd b/man/doseminer-package.Rd
diff --git a/vignettes/introduction.Rmd b/vignettes/introduction.Rmd
@@ -1,7 +1,7 @@
 ---
 title: "Introduction to doseminer"
 author: David Selby and Belay Birlie Yimer
-date: April 2021
+date: July 2021
 output:
   prettydoc::html_pretty:
     theme: leonids
@@ -55,7 +55,7 @@ The output includes seven columns:
 - `freq`: the number of times per day that the dose should be administered
 - `itvl`: the number of days between 'dose days'; if every day, then 1
 - `optional`: an indicator; can the dose be zero? If so, 1, else 0.
-- `output`: a 'residual' string of text not parsed by the algorithm. Useful for debugging. May be omitted in future releases.
+<!--- `output`: a 'residual' string of text not parsed by the algorithm. Useful for debugging. May be omitted in future releases.-->
 
 The package is vectorised, so you can provide a vector and it should process all of it, returning the result in the same order as the input.