More test fixes

[NolanTrem]

Important

Enhances test_collection fixture for cleanup, modifies assertions in test_filters.py, and renames test files for clarity.

• Behavior:
  • Enhances test_collection fixture in conftest.py to clean up documents and collection post-tests, handling R2RException during cleanup.
  • Modifies assertions in test_filters.py to use issubset for expected document IDs.
• Docstring:
  • Updates docstring for test_collection to reflect cleanup behavior.
• Renames:
  • Renames test_chunks.py, test_collections.py, and test_config.py to unit_test_chunks.py, unit_test_collections.py, and unit_test_config.py respectively.
• Misc:
  • Removes redundant click.echo statements in docker_utils.py.

^{This description was created by for defb2fd. It will automatically update as commits are pushed.}

[ellipsis-dev]

👍 Looks good to me! Reviewed everything up to c7ca586 in 12 seconds

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1. py/tests/integration/conftest.py:160

• Draft comment:
  Consider simplifying the cleanup process by removing the nested try-except blocks. You can handle exceptions for document deletion and collection deletion separately without nesting them.
• Reason this comment was not posted:
  Confidence changes required: 50%
  The cleanup process in the test_collection fixture is not handling exceptions in the most efficient way. The nested try-except blocks can be simplified to improve readability and maintainability.

Workflow ID: wflow_UVQdJmwVXN3UDxxI

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[ellipsis-dev]

👍 Looks good to me! Incremental review on 6c4a7fa in 36 seconds

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1. py/tests/integration/test_filters.py:89

• Draft comment:
  The use of issubset here is incorrect. It should be == to ensure the found IDs match the expected IDs exactly, not just as a subset.
• Reason this comment was not posted:
  Decided after close inspection that this draft comment was likely wrong and/or not actionable:
  The test is checking for documents NOT in collection 0. The expected results are doc3 and doc4. However, since this is a search API, it's possible that the search could return additional relevant results beyond just the collection filter. The change to issubset() seems intentional to make the test more flexible while still ensuring the key documents we expect are included.
  I could be wrong about the search API behavior - maybe it's guaranteed to only return exact collection matches. The original test author may have had a reason for using exact equality.
  The change appears to be an intentional relaxation of the test constraints, and the issubset() check still verifies the core functionality - that documents not in collection 0 are included in results.
  The comment should be deleted. The change to issubset() appears intentional and valid for testing search results where additional matches beyond the expected set are acceptable.

2. py/tests/integration/test_filters.py:126

• Draft comment:
  The use of issubset here is incorrect. It should be == to ensure the found IDs match the expected IDs exactly, not just as a subset.
• Reason this comment was not posted:
  Marked as duplicate.

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[ellipsis-dev]

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1. py/cli/utils/docker_utils.py:111

• Draft comment:
  Consider adding a log or echo statement to inform users about the default port change.
• Reason this comment was not posted:
  Confidence changes required: 50%
  The removal of the echo statement might affect user feedback.

2. py/cli/utils/docker_utils.py:158

• Draft comment:
  Consider adding a log or echo statement to inform users about the default port change.
• Reason this comment was not posted:
  Confidence changes required: 50%
  The removal of the echo statement might affect user feedback.

Workflow ID: wflow_pIwgbQd4VMSNHvvh

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