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Compress and index annotated VCF files #599
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marcelm
reviewed
Jun 14, 2018
annotate.nf
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| script: | ||
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| cat ${vcf} | bgzip > ${vcf}.gz |
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Use bgzip < ${vcf} > ${vcf}.gz instead to avoid winning the “Useless Use of Cat Award” 😺
szilvajuhos
approved these changes
Jun 18, 2018
jherrero
referenced
this pull request
in UCL-BLIC/Sarek_v2.2.1
Apr 11, 2019
Compress and index annotated VCF files
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close #591
New processes
CompressSnpeffVCFandCompressVEPvcfto compress and index VCFs.Since we're using the VCFs from snpEff into VEP, it was complicated to make just one process, so for the moment, it's these two.
I'll try to improve in a future refactoring session.