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Merge pull request #72 from luciannahss/lu-sirah-doc
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Links and Background
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luciannahss authored Aug 21, 2024
2 parents 48b41a3 + 4f75699 commit 325c0bb
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2 changes: 1 addition & 1 deletion docs/source/AMBER/installation.rst
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Please report bugs, errors or enhancement requests through `Issue Tracker <https://github.com/SIRAHFF/documentation/issues>`_ or if you have a question about SIRAH open a `New Discussion <https://github.com/SIRAHFF/documentation/discussions>`_.

Download `SIRAH for Amber <https://github.com/SIRAHFF/documentation/releases/download/AMBER/sirah_x2.3_23-11.amber.tar.gz>`_ and uncompress it into your working directory.
Download `SIRAH for Amber <https://github.com/SIRAHFF/documentation/releases/tag/AMBER>`_ and uncompress it into your working directory.

.. code-block:: bash
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2 changes: 1 addition & 1 deletion docs/source/Background SIRAH.rst
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Expand Up @@ -41,7 +41,7 @@ Explicit solvent

**Figure 3.** SIRAH force field Solvent CG representation.

In tandem with the DNA model development, a CG aqueous solvent was created, featuring CG water (WatFour or WT4) and monovalent electrolytic ions (sodium, potassium, chloride) (**Figure 3**) (see [:ref:`6 <ref6>`]). The WT4 model resembles a bulkier "water molecule". The monovalent ions are represented by single beads with a net charge of +/- 1e. Supra-CG solvent (WatElse or WLS) is also available (see [:ref:`7 <ref7>`])
In tandem with the DNA model development, a CG aqueous solvent was created, featuring CG water (WatFour or WT4) and monovalent electrolytic ions (sodium, potassium, chloride) (**Figure 3**) (see [:ref:`6 <ref6>`]). The WT4 model resembles a bulkier "water molecule". The monovalent ions are represented by single beads with a net charge of +/- 1e. Supra-CG solvent (WatElse or WLS) is also available (see [:ref:`7 <ref7>`]).


Protein model
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2 changes: 1 addition & 1 deletion docs/source/GROMACS/installation-G.rst
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Expand Up @@ -41,7 +41,7 @@ ___________________________

Please report bugs, errors or enhancement requests through `Issue Tracker <https://github.com/SIRAHFF/documentation/issues>`_ or if you have a question about SIRAH open a `New Discussion <https://github.com/SIRAHFF/documentation/discussions>`_.

Download `SIRAH for GROMACS <https://github.com/SIRAHFF/documentation/releases/download/GROMACS/sirah_x2.2_20-07.ff.tar.gz>`_ and uncompress it into your working directory.
Download `SIRAH for GROMACS <https://github.com/SIRAHFF/documentation/releases/tag/GROMACS>`_ and uncompress it into your working directory.

.. code-block:: bash
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