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SIRAHFF committed Aug 21, 2024
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4 changes: 2 additions & 2 deletions AMBER/installation.html
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Expand Up @@ -122,7 +122,7 @@ <h1>Download and Setting up SIRAH<a class="headerlink" href="#download-and-setti
<p>Please report bugs, errors or enhancement requests through <a class="reference external" href="https://github.com/SIRAHFF/documentation/issues">Issue Tracker</a> or if you have a question about SIRAH open a <a class="reference external" href="https://github.com/SIRAHFF/documentation/discussions">New Discussion</a>.</p>
</div>
<p>Download <a class="reference external" href="https://github.com/SIRAHFF/documentation/releases/tag/AMBER">SIRAH for Amber</a> and uncompress it into your working directory.</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>tar<span class="w"> </span>-xzvf<span class="w"> </span>sirah_x2.3_23-11.amber.tar.gz
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>tar<span class="w"> </span>-xzvf<span class="w"> </span>sirah_x2.3_24-07.amber.tar.gz
</pre></div>
</div>
<p>If you are using a different version of SIRAH, type:</p>
Expand All @@ -140,7 +140,7 @@ <h1>Download and Setting up SIRAH<a class="headerlink" href="#download-and-setti
</pre></div>
</div>
<p>Create the following symbolic link in the folder tutorialX.X:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ln<span class="w"> </span>-s<span class="w"> </span>../sirah_x2.3_23-11.amber<span class="w"> </span>sirah.amber
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ln<span class="w"> </span>-s<span class="w"> </span>../sirah_x2.3_24-07.amber<span class="w"> </span>sirah.amber
</pre></div>
</div>
<div class="admonition note">
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4 changes: 2 additions & 2 deletions Tutorials amber.html
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Expand Up @@ -212,7 +212,7 @@ <h3>Download and Setting up SIRAH<a class="headerlink" href="#download-and-setti
<p>Please report bugs, errors or enhancement requests through <a class="reference external" href="https://github.com/SIRAHFF/documentation/issues">Issue Tracker</a> or if you have a question about SIRAH open a <a class="reference external" href="https://github.com/SIRAHFF/documentation/discussions">New Discussion</a>.</p>
</div>
<p>Download <a class="reference external" href="https://github.com/SIRAHFF/documentation/releases/tag/AMBER">SIRAH for Amber</a> and uncompress it into your working directory.</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>tar<span class="w"> </span>-xzvf<span class="w"> </span>sirah_x2.3_23-11.amber.tar.gz
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>tar<span class="w"> </span>-xzvf<span class="w"> </span>sirah_x2.3_24-07.amber.tar.gz
</pre></div>
</div>
<p>If you are using a different version of SIRAH, type:</p>
Expand All @@ -230,7 +230,7 @@ <h3>Download and Setting up SIRAH<a class="headerlink" href="#download-and-setti
</pre></div>
</div>
<p>Create the following symbolic link in the folder tutorialX.X:</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ln<span class="w"> </span>-s<span class="w"> </span>../sirah_x2.3_23-11.amber<span class="w"> </span>sirah.amber
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>ln<span class="w"> </span>-s<span class="w"> </span>../sirah_x2.3_24-07.amber<span class="w"> </span>sirah.amber
</pre></div>
</div>
<div class="admonition note">
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6 changes: 3 additions & 3 deletions _sources/AMBER/installation.rst.txt
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Expand Up @@ -48,7 +48,7 @@ Download `SIRAH for Amber <https://github.com/SIRAHFF/documentation/releases/tag

.. code-block:: bash
tar -xzvf sirah_x2.3_23-11.amber.tar.gz
tar -xzvf sirah_x2.3_24-07.amber.tar.gz
If you are using a different version of SIRAH, type:

Expand All @@ -74,7 +74,7 @@ Create the following symbolic link in the folder tutorialX.X:

.. code-block:: bash
ln -s ../sirah_x2.3_23-11.amber sirah.amber
ln -s ../sirah_x2.3_24-07.amber sirah.amber
.. note::

Expand All @@ -86,4 +86,4 @@ Create the following symbolic link in the folder tutorialX.X:

Check the `AMBER Manual <https://ambermd.org/doc12/Amber23.pdf>`_ section **3.11.2** for more details.

However, if you want the lastest parameters and implementations strongly advise you to use the developers version of SIRAH from GitHub.
However, if you want the lastest parameters and implementations strongly advise you to use the developers version of SIRAH from GitHub.
2 changes: 1 addition & 1 deletion searchindex.js

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