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Prepare for 0.3.0 release #126

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merged 7 commits into from
Jan 27, 2025
Merged

Prepare for 0.3.0 release #126

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a452ef7
Update renv
milanmlft Jan 23, 2025
04dd18d
Use R 4.4.2 as base in Dockerfiles
milanmlft Jan 23, 2025
76676dd
Snakecase functions are deprecated in CDMConnector 1.7.0
milanmlft Jan 23, 2025
5e3cea7
Bump version to `0.3.0`
milanmlft Jan 23, 2025
4b62e80
Revert "Update renv"
milanmlft Jan 23, 2025
abaae3a
Set single core for docker build, see #127
milanmlft Jan 27, 2025
731697e
Update omopcat renv
milanmlft Jan 27, 2025
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2 changes: 1 addition & 1 deletion .env.sample
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Expand Up @@ -11,7 +11,7 @@ PREPROCESS_DB_USERNAME= # username for the source database
PREPROCESS_DB_PASSWORD= # password for the source database
PREPROCESS_DB_CDM_SCHEMA= # Schema name in the database to connect the OMOP CDM to
PREPROCESS_SUMMARISE_LEVEL=monthly # Level to summarise record counts at (monthly or quarterly)
BUILD_CORES_MAKE=4 # Number of cores to use for make in docker build
BUILD_CORES_MAKE=1 # Number of cores to use for make in docker build

# Low-frequency replacement
LOW_FREQUENCY_THRESHOLD=10
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2 changes: 1 addition & 1 deletion app/DESCRIPTION
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@@ -1,6 +1,6 @@
Package: omopcat
Title: The OMOP Data Catalogue Dashboard
Version: 0.2.2.9000
Version: 0.3.0
Authors@R: c(
person('Milan', 'Malfait', email = 'm.malfait@ucl.ac.uk', role = c('cre', 'aut')),
person('Stefan', 'Piatek', role = 'aut'),
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4 changes: 2 additions & 2 deletions app/Dockerfile
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@@ -1,5 +1,5 @@
# Stage 1: installing renv environment
FROM rocker/shiny-verse:4.4.1 AS base
FROM rocker/shiny-verse:4.4.2 AS base

WORKDIR /app

Expand All @@ -26,7 +26,7 @@ RUN install2.r --error --skipinstalled renv devtools remotes && \
RUN R -e 'remotes::install_github("SAFEHR-data/omop-bundles")'

# Stage 2: Installing omopcat
FROM rocker/shiny-verse:4.4.1
FROM rocker/shiny-verse:4.4.2

WORKDIR /app
COPY --from=base /app .
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2 changes: 1 addition & 1 deletion app/NEWS.md
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@@ -1,4 +1,4 @@
# omopcat (development version)
# omopcat 0.3.0

* Keep the concepts table at a minimum height (@milanmlft #114)
* Use better low-frequency replacement values (@milanmlft #115)
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2 changes: 1 addition & 1 deletion app/inst/golem-config.yml
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@@ -1,6 +1,6 @@
default:
golem_name: omopcat
golem_version: 0.2.2
golem_version: 0.3.0
app_prod: no
production:
app_prod: yes
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