minimal set of changes to execute JEDI ATM only CI case (NOAA-EMC#2294)

RussTreadon-NOAA · Feb 26, 2024 · 4d8b4ee · 4d8b4ee
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diff --git a/ci/cases/pr/C48C48_ufs_hybatmDA.yaml b/ci/cases/pr/C48C48_ufs_hybatmDA.yaml
@@ -9,6 +9,7 @@ arguments:
   resensatmos: 48
   comroot: {{ 'RUNTESTS' | getenv }}/COMROOT
   expdir: {{ 'RUNTESTS' | getenv }}/EXPDIR
+  icsdir: {{ 'ICSDIR_ROOT' | getenv }}/C48C48
   idate: 2021032312
   edate: 2021032400
   nens: 2
@@ -17,6 +18,5 @@ arguments:
   yaml: {{ HOMEgfs }}/ci/cases/yamls/ufs_hybatmDA_defaults.ci.yaml
 
 skip_ci_on_hosts:
-  - hera
   - orion
   - hercules
diff --git a/workflow/setup_expt.py b/workflow/setup_expt.py
@@ -219,7 +219,7 @@ def link_files_from_src_to_dst(src_dir, dst_dir):
     src_dir = os.path.join(inputs.icsdir, current_cycle_dir, src_atm_anl_dir)
     dst_dir = os.path.join(rotdir, current_cycle_dir, dst_atm_anl_dir)
     makedirs_if_missing(dst_dir)
-    for ftype in ['abias', 'abias_pc', 'abias_air', 'radstat']:
+    for ftype in ['abias', 'abias_pc', 'abias_air', 'radstat', 'atms_n20.satbias.nc4', 'atms_n20.satbias_cov.nc4', 'atms_n20.tlapse.txt']:
         fname = f'{inputs.cdump}.t{idatestr[8:]}z.{ftype}'
         src_file = os.path.join(src_dir, fname)
         if os.path.exists(src_file):