Merge pull request #50 from simleo/fix_run_samefile

run: don't break if alternateName is same as id
ResearchObject · Jun 15, 2023 · 600ab2d · 600ab2d
2 parents ed41c26 + b653e83
commit 600ab2d
Showing 1 changed file with 4 additions and 1 deletion.
diff --git a/src/runcrate/run.py b/src/runcrate/run.py
@@ -169,7 +169,10 @@ def rename_data_entities(obj, workdir):
         if "File" in as_list(obj.type):
             (dst_path.parent).mkdir(parents=True, exist_ok=True)
             src_path = workdir / obj.id
-            shutil.copy(src_path, dst_path)
+            try:
+                shutil.copy(src_path, dst_path)
+            except shutil.SameFileError:
+                pass
 
 
 def find_streamflow_file(crate):