Galaxy Formed

Galaxy Formed is a Docker Compose setup to run a customized Galaxy instance with additional tools.

Overview

This setup includes:

• Galaxy: A bioinformatics platform for data analysis.
• Lemaitre: A tool container for managing personal tools within Galaxy.

Services

• lemaitre:

  • Exposes port 8081.

• galaxy: Runs the quay.io/bgruening/galaxy image.

  • Exposes multiple ports:
    • 8080 → Galaxy Web UI.
    • 8021 → FTP service.
    • 8022 → SSH service.
  • Uses a shared volume for persistent storage and tool management.
  • Configures additional tool configurations.

Usage

1. Clone the repository:

   git clone https://github.com/Reproducible-Bioinformatics/galaxy-formed.git
   cd galaxy-formed

2. Start the services:

   docker-compose up -d

3. Access the Galaxy instance at http://localhost:8080.

Stopping and Cleaning Up

To stop the containers:

docker-compose down

To remove volumes (warning: this will delete stored data):

docker-compose down -v