Merge pull request #576 from ReproNim/stebo85-patch-2

added FSL interactivity note
ReproNim · Sep 11, 2023 · 3ee6970 · 3ee6970
2 parents f3bd737 + 18a7716
commit 3ee6970
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/docs/user_guide/installation.rst b/docs/user_guide/installation.rst
@@ -11,6 +11,14 @@ Docker or Singularity.
 
     docker run --rm repronim/neurodocker:latest --help
 
+Note: Some tools require an interactive input during installation (e.g. FSL). This can either be handled using the Neurodocker `--yes` option (see examples -> FSL) or running the container interactively will also allow to answer this question:
+
+.. code-block:: bash
+
+    docker run -i --rm
+
+Alternatively, a singularity container:
+
 .. code-block:: bash
 
     singularity run docker://repronim/neurodocker:latest --help