Restart attribute error #1847
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Restart attribute error #1847
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amarkpayne
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Complexity: Low
For Next Release
Status: Ready for Review
Codecov Report
@@ Coverage Diff @@
## master #1847 +/- ##
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+ Coverage 44.22% 44.22% +<.01%
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Files 83 83
Lines 21539 21538 -1
Branches 5644 5645 +1
==========================================
Hits 9526 9526
+ Misses 10957 10942 -15
- Partials 1056 1070 +14
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mliu49
reviewed
Dec 11, 2019
rmgpy/rmg/mainTest.py
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| cls.rmg = RMG(input_file=os.path.join(cls.testDir, 'restart_no_filters.py'), | ||
| output_directory=os.path.join(cls.outputDir)) | ||
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| cls.rmg.execute() |
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I feel like executing the job should be part of the test method rather than in setup.
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I agree. Sorry, I copied from the tests above, but I agree this makes more sense.
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The first test restarts the minimal example after ~20 species and includes filters. The second test restarts the super-minimal example after ~9 species and does not include filters.
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mliu49
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Dec 11, 2019
This was referenced Dec 13, 2019
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Motivation or Problem
See #1846
Description of Changes
This PR address the issue identified in #1846, as well as dealing with a deprecation warnings we were getting from h5py. Finally, this PR adds functional tests that run restart jobs (both with and without filters) to try to catch errors like this in the future.
Testing
The functional tests added should catch the error this PR addresses
Additional note
The functional tests simply check that the restart jobs can complete. A more robust test would be ensure that the same model is achieved, but this would require running a full RMG job, and then restarting from an intermediate seed. For the sake of time in running our tests, this was not implemented.
On my computer, the whole suite of tests in mainTest.py including the new functional tests can run in less than 150 seconds, so I don't think this will drastically increase our testing time.