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Consolidate Arkane documentation input file #1544

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merged 1 commit into from
Mar 17, 2019

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goldmanm
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@goldmanm goldmanm commented Feb 2, 2019

There was originally a lot of duplication between the input.rst
and input_pdep.rst. This creates issues with maintenance and
accuracy. This commit reduces documentation duplication by integrated
the information about pdep into the original input file and removed
the input_pdep.rst file. This should provide more accurate information
and improve maintainability.

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Read through changes, build and ensure no errors.

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Thanks! Looking good. See minor comments

documentation/source/users/arkane/input.rst Outdated Show resolved Hide resolved
documentation/source/users/arkane/input.rst Outdated Show resolved Hide resolved
@goldmanm goldmanm force-pushed the arkane_documentation_consolidation branch from fbd5676 to 4df6f6c Compare February 11, 2019 03:07
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codecov bot commented Feb 11, 2019

Codecov Report

Merging #1544 into master will increase coverage by 0.01%.
The diff coverage is n/a.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #1544      +/-   ##
==========================================
+ Coverage   41.84%   41.86%   +0.01%     
==========================================
  Files         165      165              
  Lines       28008    28008              
  Branches     5713     5713              
==========================================
+ Hits        11721    11726       +5     
+ Misses      15498    15494       -4     
+ Partials      789      788       -1
Impacted Files Coverage Δ
rmgpy/data/kinetics/family.py 58.56% <0%> (+0.29%) ⬆️

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Looks good, I had one minor comment. Would you like to squash the two commits together (since the second modifies the first)?

activeJRotor = True,
sensitivity_conditions = [[(1000, 'K'), (1, 'bar')], [(1500, 'K'), (10, 'bar')]]
)
Cantherm also has the ability to vary barrier heights and generate sensitivity coefficients as a function of changes
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Arkane

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@goldmanm, can you fix this?

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Sorry, I didn't see the name change in just the email (so I just squashed the two commits together and thought it was done). Just replaced the two references to Cantherm with Arkane.

@goldmanm goldmanm force-pushed the arkane_documentation_consolidation branch 2 times, most recently from 4129662 to 1a670d4 Compare February 21, 2019 04:53
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alongd commented Feb 21, 2019

I got an error compiling html:
Malformed table. Bottom/header table border does not match top border. for the first table under 3.10. Pressure Dependent Rate Calculation. The bottom border seems too long. Could you take a look?

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alongd commented Mar 16, 2019

@goldmanm, can you take a look at my comment above?

There was originally a lot of duplication between the input.rst
and input_pdep.rst. This creates issues with maintenance and
accuracy. This commit reduces documentation duplication by integrated
the information about pdep into the original input file and removed
the input_pdep.rst file. This should provide more accurate information
and improve maintainability.

Elaborated on Arkane's pdep sensivitity and moved the syntax example
next to the description of parameters. Added column to the parameter
list specifying whether parameter is required or not.
@goldmanm goldmanm force-pushed the arkane_documentation_consolidation branch from 1a670d4 to bbd8e83 Compare March 16, 2019 15:40
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Just updated. It should be fixed. Though when i compile the documentation, I get 132 warnings, due to issues with Sphinx's autodoc function failing. I am able to open the html and look at all the tables without error now.

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Thanks!

@alongd alongd merged commit c39c888 into master Mar 17, 2019
@alongd alongd deleted the arkane_documentation_consolidation branch March 17, 2019 19:22
@mliu49 mliu49 mentioned this pull request May 15, 2019
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2 participants