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@RareCareWA

RareCareWA

README.md

Hi there 👋

Welcome to the RareCare WA org!

Colombo Scholarship Students

You can find tools to help you in the forked repos as well as project boards for each of the internship projects except the Cliniface project working with @richeytastic.

Not all tools are able to be forked into GitHub (e.g. those in GitLab) so the other resources below may also be helpful...

Annotation tools

Sypmtom Annotation Made Simple (SAMS) https://www.genecascade.org/sams-cgi/index.cgi

doc2hpo https://doc2hpo.wglab.org/index.jsp

APIs (excludes Terminology Servers)

Symptom Annotation Made Simple https://www.genecascade.org/sams-cgi/index.cgi#api

EBI Ontology Lookup Service https://www.ebi.ac.uk/ols/docs/api

ZOOMA Annotation (uses EBI OLS per above) https://www.ebi.ac.uk/spot/zooma/docs/api

Terminology Servers

FHIR based terminology resources including SNOMED CT-AU and HPO https://ontoserver.csiro.au/docs/6/api-fhir.html

Popular repositories Loading

  1. redcap_fhir_ontology_provider redcap_fhir_ontology_provider Public

    Forked from aehrc/redcap_fhir_ontology_provider

    REDCap external module provides support for referencing an external Fhir based ontology server to lookup values.

    PHP

  2. redcap_advanced_fhir_ontology redcap_advanced_fhir_ontology Public

    Forked from aehrc/redcap_advanced_fhir_ontology

    REDCap External Module to give autocomplete using a FHIR terminology server with advanced options.

    PHP

  3. redmatch redmatch Public

    Forked from aehrc/redmatch

    A rules-based transformation engine that allows exporting data in REDCap as FHIR resources.

    Java

  4. fhir-tx-transforms fhir-tx-transforms Public

    Forked from aehrc/fhir-tx-transforms

    Transformations of various code systems to FHIR.

    Java

  5. fhir-hgnc fhir-hgnc Public

    Forked from aehrc/fhir-hgnc

    Transforms HGNC source files into FHIR code systems.

    Java

  6. doc2hpo doc2hpo Public

    Forked from stormliucong/doc2hpo

    Java

Repositories

Showing 10 of 33 repositories
  • phenolib Public
    RareCareWA/phenolib’s past year of commit activity
    Python 0 1 0 0 Updated Mar 13, 2024
  • Slicer Public Forked from Slicer/Slicer

    Multi-platform, free open source software for visualization and image computing.

    RareCareWA/Slicer’s past year of commit activity
    C++ 0 574 0 0 Updated Jan 9, 2023
  • TotalSegmentator Public Forked from wasserth/TotalSegmentator

    Tool for robust segmentation of 104 important anatomical structures in CT images

    RareCareWA/TotalSegmentator’s past year of commit activity
    Python 0 Apache-2.0 267 0 0 Updated Jan 6, 2023
  • invesalius3 Public Forked from invesalius/invesalius3

    3D medical imaging reconstruction software

    RareCareWA/invesalius3’s past year of commit activity
    Python 0 GPL-2.0 300 0 0 Updated Dec 28, 2022
  • blender Public Forked from blender/blender

    Official mirror of Blender

    RareCareWA/blender’s past year of commit activity
    C 0 2,122 0 0 Updated Dec 25, 2022
  • SlicerHeart Public Forked from SlicerHeart/SlicerHeart

    3D Slicer extension for cardiac analysis

    RareCareWA/SlicerHeart’s past year of commit activity
    Python 0 BSD-3-Clause 43 0 0 Updated Dec 8, 2022
  • presidio Public Forked from microsoft/presidio

    Context aware, pluggable and customizable data protection and de-identification SDK for text and images

    RareCareWA/presidio’s past year of commit activity
    Python 0 MIT 592 0 0 Updated Dec 2, 2022
  • .github Public
    RareCareWA/.github’s past year of commit activity
    0 0 0 0 Updated Nov 25, 2022
  • snow-owl Public Forked from b2ihealthcare/snow-owl

    🦉 Snow Owl Terminology Server - production-ready, scalable, supports SNOMED CT International and Extensions, LOINC, ICD-10, dm+d, custom code systems and many others

    RareCareWA/snow-owl’s past year of commit activity
    Java 0 Apache-2.0 33 0 0 Updated Nov 24, 2022
  • phepagen Public Forked from pnrobinson/phepagen
    RareCareWA/phepagen’s past year of commit activity
    Java 0 BSD-3-Clause 1 0 0 Updated Nov 16, 2022
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

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