Code

merge main to cran for v1.2.1#20

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Qile0317 merged 50 commits intocranQile0317/APackOfTheClones:cranfrom mainQile0317/APackOfTheClones:mainCopy head branch name to clipboardOct 28, 2024

+1,346-950

Commits

Commits on Jan 13, 2024

• fixed NEWS for main branch

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Commits on Jan 18, 2024

• vignette fixes

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Commits on Jan 19, 2024

• further fixes to main vignette

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Commits on Feb 5, 2024

• updated main pkgdown.yml

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Commits on Apr 5, 2024

• Merge branch 'dev' for CRAN release 1.1.0

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Commits on Apr 16, 2024

• Merge branch 'dev' for CRAN 1.2.0

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• increment dev version

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Commits on Apr 17, 2024

• init joss

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Commits on Apr 18, 2024

• 2 potential sources and joss figure

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Commits on Apr 20, 2024

• joss figure change, paper and sources progress

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Commits on Apr 22, 2024

• paper progress

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• joss progress and rename workflow

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• modify joss and added conduct and contributing

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• add conduct and contrib guidelines

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• add conduct and contrib guidelines

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Commits on Apr 25, 2024

• slight joss reword

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Commits on May 2, 2024

• changed fig to png, unabbreviate USA

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Commits on Jun 23, 2024

• fixed dois in joss paper

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• added joss badge

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Commits on Jun 28, 2024

• spelling fixes and added ORCID into DESCRIPTION

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• spelling fixes, rm deprecation startup msg, fixed description, rm magrittr dep

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Commits on Jun 29, 2024

• modified README and NEWS

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• delete joss and cran comments for v1.2.1

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• Merge branch 'v1.2.1' into dev

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• rm draft-pdf.yml

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Commits on Oct 9, 2024

• removed all trailing whitespace

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  7e4ee8f

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• some changes

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  c7c8a3d

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• rm some TODOs and FIXMEs

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  f1fd669

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• update citation, incr patch in NEWs but not DESCRIPTION

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• update combined_pbmc

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• remove redundant imports, update citation with CRAN DOI

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  82c97e2

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• modified R CMD check action to only check oldrel1

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• add back methods to imports

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• redid packing algorithm to take into account double precision, updated test data. 3 cases fail

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Commits on Oct 10, 2024

• changed clone highlight data

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• more verbosity options for helper

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• improved and more fixes for cluster lsit checker

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  4be31ec

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• delete all additional validation

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• rm glue, update NEWS

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  401c976

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• update spelling wordlist

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  f78f190

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• slight fixes and test skips on macos

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  64ba8c9

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• more macos skips

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  c95d2e8

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• Merge pull request #16 from Qile0317/1.2.1

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• add CRAN comments

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• Increment version number to 1.2.1

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• fixed contributing

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• Merge branch 'main' into dev

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• Merge pull request #18 from Qile0317/dev

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• updated badges with zenodo

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• Update README.md

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