GitHub - QIICR/Iowa2DICOM: Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.

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Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.

peerj.com/articles/2057/

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Name		Name	Last commit message	Last commit date
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CMake		CMake
Common		Common
ConvertSegmentations		ConvertSegmentations
Doc		Doc
Resources		Resources
Scripts		Scripts
SingleTimepoint		SingleTimepoint
Testing		Testing
Util		Util
.gitignore		.gitignore
CMakeLists.txt		CMakeLists.txt
README		README
TODO		TODO

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NOTE: these scripts were used for conversion of the Iowa QIN-HEADNECK derived data. 
They are not maintained, and instead the general purpose functionality is being 
migrated into the Reporting repository https://github.com/fedorov/Reporting
and into the 3D Slicer core.

The process of data conversion is described in the following manuscript:

Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, 
Pieper S, Kikinis R, Buatti J, Beichel RR. (2016) DICOM for quantitative imaging 
biomarker development: a standards based approach to sharing clinical data and 
structured PET/CT analysis results in head and neck cancer research. PeerJ 4:e2057 
https://doi.org/10.7717/peerj.2057

The resulting data is available in TCIA QIN-HEADNECK collection:

https://wiki.cancerimagingarchive.net/display/Public/QIN-HeadNeck