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1. mcSIM mcSIM Public

   Code for running a multicolor structured illumination microscopy (SIM) experiment using a DLP6500 digital micromirror device (DMD) and performing SIM reconstruction.

   Python 56 15

2. OPM OPM Public

   Control, reconstruction, and analysis code for oblique plane microscopy.

   Python 22 7

3. localize-psf localize-psf Public

   Code for localizing diffraction limited fluorescent objects and fitting the results to various different point-spread function (PSF) models.

   Python 5 2

4. merfish3d-analysis merfish3d-analysis Public

   GPU accelerated post-processing for 2D or 3D iterative barcoded FISH data.

   Python 6 2

5. I2K2022-SIM I2K2022-SIM Public

   I2K 2022 mcSIM tutorial

   Jupyter Notebook 6

6. napari-mcsim napari-mcsim Public

   Napari plugin automating structured illumination microscopy (SIM) reconstruction and diagnostics from the mcSIM package

   Python 1