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Update DiNTS Tutorials #469

Merged
merged 64 commits into from
Dec 7, 2021
Merged

Update DiNTS Tutorials #469

merged 64 commits into from
Dec 7, 2021

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dongyang0122
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Description

Minor updates on existing DiNTS tutorials

Status

Work in progress

Checks

  • Notebook runs automatically ./runner [-p <regex_pattern>]

dongy and others added 30 commits November 18, 2021 22:34
initialize dints tutorials
163a008 
Signed-off-by: dongy <dongy@nvidia.com>
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
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update scripts
1a1a58d 
Signed-off-by: dongy <dongy@nvidia.com>
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
f7473d0 
for more information, see https://pre-commit.ci
update scripts
1ba684e 
Signed-off-by: dongy <dongy@nvidia.com>
Merge branch 'master' of https://github.com/dongyang0122/tutorials
85ee1a0
update scripts
db1cafe 
Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122
Update README.md
981b303
@dongyang0122
Update README.md
d98ca94
update scripts
3e820fd 
Signed-off-by: dongy <dongy@nvidia.com>
Merge branch 'master' of https://github.com/dongyang0122/tutorials
dcd4e10
@heyufan1995
Change Dints interface
0d3c8e7
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[pre-commit.ci] auto fixes from pre-commit.com hooks
b8a3101 
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@heyufan1995
Merge branch 'master' of github.com:dongyang0122/tutorials
1981544
@heyufan1995
Modify scripts for new Dints interface
2a5bb06
@heyufan1995
Merge branch 'master' of github.com:dongyang0122/tutorials
fc2f277
update scripts
698a9a0 
Signed-off-by: dongy <dongy@nvidia.com>
update scripts
4a44993 
Signed-off-by: dongy <dongy@nvidia.com>
update scripts
8da5dc3 
Signed-off-by: dongy <dongy@nvidia.com>
update scripts
2260ce2 
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@heyufan1995
Test push
396c1ae
update scripts
5669d7b 
Signed-off-by: dongy <dongy@nvidia.com>
update scripts
0a1cc78 
Signed-off-by: dongy <dongy@nvidia.com>
update scripts
ee20f21 
Signed-off-by: dongy <dongy@nvidia.com>
update readme
3122caf 
Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>
@heyufan1995
Add readme
6ccdd50
@heyufan1995
Merge branch 'master' of github.com:dongyang0122/tutorials
51f3127
@heyufan1995
Update readme
79c9aab
@heyufan1995
Change lr in search
d29f086
update readme
bdc759e 
Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>
wyli and others added 14 commits December 1, 2021 18:07
@wyli
Merge remote-tracking branch 'upstream/master'
f3ea3c9 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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fixes readme typos
e69a472 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
Merge remote-tracking branch 'dong/master'
cf5594e 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
update readmes
6fb6b3e 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
update readme
76120b6 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
qa commit
7d82859 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@wyli
link
5cebe49 
Signed-off-by: Wenqi Li <wenqil@nvidia.com>
@heyufan1995
Add plot arch_code utils
8434a7f
@heyufan1995
Fix bugs in search and update readme
5f290b6
@heyufan1995
Fix combination weights bug
327c190
@heyufan1995
Small typo update
a6ee0ad
@heyufan1995
Fix minor bug in train_dints
a165628
update scripts
e94d32e 
Signed-off-by: dongy <dongy@nvidia.com>
@dongyang0122 dongyang0122 requested review from wyli and Nic-Ma December 6, 2021 19:10
@dongyang0122 dongyang0122 self-assigned this Dec 6, 2021
dongyang0122 and others added 10 commits December 6, 2021 13:19
@dongyang0122
Merge branch 'master' into update-dints-tutorials
564a4f9
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update scripts
9c076e1 
Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>
update scripts
4417673 
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update scripts
c491d83 
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update scripts
39dd57d 
Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>
update scripts
4260ed2 
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@heyufan1995
Update Readme
296a030
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Merge branch 'master' into update-dints-tutorials
0381db6
wyli
wyli approved these changes Dec 7, 2021
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thanks, looks good to me. would be great if the tutorial is based on the monai docker image instead of based on pytorch directly: docker pull projectmonai/monai:0.8.0

@wyli wyli merged commit 1c05d9e into Project-MONAI:master Dec 7, 2021
boneseva pushed a commit to boneseva/MONAI-tutorials that referenced this pull request Apr 21, 2024
@dongyang0122 @pre-commit-ci @heyufan1995
Update DiNTS Tutorials (Project-MONAI#469)
2630c9a 
* initialize dints tutorials

Signed-off-by: dongy <dongy@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* Update README.md

* Update README.md

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* Change Dints interface

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Modify scripts for new Dints interface

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* Test push

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update readme

Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>

* Add readme

* Update readme

* Change lr in search

* update readme

Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>

* Enable single GPU

* update readme

Signed-off-by: Dong Yang <dongy@dongy-mlt.client.nvidia.com>

* Add visualization tutorial transform image  (Project-MONAI#448)

* [DLMED] add visualization tutorial

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* [DLMED] add image

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* [DLMED] update notebook

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* [DLMED] update notebook

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* [DLMED] fix PEP error

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* Update spleen_segmentation_3d.ipynb (Project-MONAI#455)

The `pip install` statement is missing pytorch-ignite. Changing:
`!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm]"`
to 
`!python -c "import monai" || pip install -q "monai-weekly[gdown, nibabel, tqdm, ignite]"`

* Figures added, pretrained weights link added, minor fixes (Project-MONAI#456)

* Figures added, pretrained weights link added, minor fixes

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* Add itkwidgets example in notebook (Project-MONAI#454)

* [DLMED] add itkwidgets

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* [DLMED] add reference screenshot

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* [DLMED] update to PLS orientation

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* MIL example (Project-MONAI#431)

* MIL example

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* mil tutorial update

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* small updates

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* updated images

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* gdown for json

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* Update README

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* 450 update AsDiscrete (Project-MONAI#451)

* update asdiscrete

Signed-off-by: Yiheng Wang <vennw@nvidia.com>

* update postprocessing figures

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* fix version error of mutual info

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* update to use include in torchin

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* 459 update nvidia flare 2.0 example (Project-MONAI#460)

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* Weights Link Updated (Project-MONAI#465)

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* link

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* Add plot arch_code utils

* Fix bugs in search and update readme

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* Small typo update

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* update scripts

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for more information, see https://pre-commit.ci

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* update scripts

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* update scripts

Signed-off-by: dongy <dongy@nvidia.com>

* update scripts

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* update scripts

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* Update Readme

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: dongy <dongy@nvidia.com>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: heyufan1995 <heyufan1995@gmail.com>
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@wyli wyli wyli approved these changes

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@dongyang0122 @wyli @heyufan1995 @Nic-Ma @nvahmadi @finalelement @myron @yiheng-wang-nv