correct typo in auto3dseg (#178)

Project-MONAI · Jan 5, 2023 · b1198c4 · b1198c4
1 parent 07da7ad
commit b1198c4
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Showing 9 changed files with 12 additions and 12 deletions.
diff --git a/auto3dseg/algorithm_templates/dints/configs/hyper_parameters.yaml b/auto3dseg/algorithm_templates/dints/configs/hyper_parameters.yaml
@@ -63,11 +63,11 @@ finetune:
 validate:
   ckpt_name: "$@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'"
   save_mask: true
-  ouptut_path: "$@bundle_root + '/prediction_fold' + str(@fold)"
+  output_path: "$@bundle_root + '/prediction_fold' + str(@fold)"
 
 # inference
 infer:
   ckpt_name: "$@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'"
   fast: false
   data_list_key: testing
-  ouptut_path: "$@bundle_root + '/prediction_' + @infer#data_list_key"
+  output_path: "$@bundle_root + '/prediction_' + @infer#data_list_key"
diff --git a/auto3dseg/algorithm_templates/dints/scripts/infer.py b/auto3dseg/algorithm_templates/dints/scripts/infer.py
@@ -45,7 +45,7 @@ def __init__(self, config_file: Optional[Union[str, Sequence[str]]] = None, **ov
 
         ckpt_name = parser.get_parsed_content("infer")["ckpt_name"]
         data_list_key = parser.get_parsed_content("infer")["data_list_key"]
-        output_path = parser.get_parsed_content("infer")["ouptut_path"]
+        output_path = parser.get_parsed_content("infer")["output_path"]
 
         if not os.path.exists(output_path):
             os.makedirs(output_path, exist_ok=True)

diff --git a/auto3dseg/algorithm_templates/dints/scripts/validate.py b/auto3dseg/algorithm_templates/dints/scripts/validate.py
@@ -48,7 +48,7 @@ def run(config_file: Optional[Union[str, Sequence[str]]] = None, **override):
     softmax = parser.get_parsed_content("training#softmax")
 
     ckpt_name = parser.get_parsed_content("validate")["ckpt_name"]
-    output_path = parser.get_parsed_content("validate")["ouptut_path"]
+    output_path = parser.get_parsed_content("validate")["output_path"]
     save_mask = parser.get_parsed_content("validate")["save_mask"]
 
     if not os.path.exists(output_path):

diff --git a/auto3dseg/algorithm_templates/segresnet2d/configs/hyper_parameters.yaml b/auto3dseg/algorithm_templates/segresnet2d/configs/hyper_parameters.yaml
@@ -61,11 +61,11 @@ finetune:
 validate:
   ckpt_name: "$@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'"
   save_mask: true
-  ouptut_path: "$@bundle_root + '/prediction_fold' + str(@fold)"
+  output_path: "$@bundle_root + '/prediction_fold' + str(@fold)"
 
 # inference
 infer:
   ckpt_name: "$@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'"
   fast: false
   data_list_key: testing
-  ouptut_path: "$@bundle_root + '/prediction_' + @infer#data_list_key"
+  output_path: "$@bundle_root + '/prediction_' + @infer#data_list_key"
diff --git a/auto3dseg/algorithm_templates/segresnet2d/scripts/infer.py b/auto3dseg/algorithm_templates/segresnet2d/scripts/infer.py
@@ -47,7 +47,7 @@ def __init__(self, config_file: Optional[Union[str, Sequence[str]]] = None, **ov
 
         ckpt_name = parser.get_parsed_content("infer")["ckpt_name"]
         data_list_key = parser.get_parsed_content("infer")["data_list_key"]
-        output_path = parser.get_parsed_content("infer")["ouptut_path"]
+        output_path = parser.get_parsed_content("infer")["output_path"]
 
         if not os.path.exists(output_path):
             os.makedirs(output_path, exist_ok=True)

diff --git a/auto3dseg/algorithm_templates/segresnet2d/scripts/validate.py b/auto3dseg/algorithm_templates/segresnet2d/scripts/validate.py
@@ -49,7 +49,7 @@ def run(config_file: Optional[Union[str, Sequence[str]]] = None, **override):
     softmax = parser.get_parsed_content("softmax")
 
     ckpt_name = parser.get_parsed_content("validate")["ckpt_name"]
-    output_path = parser.get_parsed_content("validate")["ouptut_path"]
+    output_path = parser.get_parsed_content("validate")["output_path"]
     save_mask = parser.get_parsed_content("validate")["save_mask"]
 
     if not os.path.exists(output_path):

diff --git a/auto3dseg/algorithm_templates/swinunetr/configs/hyper_parameters.yaml b/auto3dseg/algorithm_templates/swinunetr/configs/hyper_parameters.yaml
@@ -19,7 +19,7 @@ infer:
   ckpt_name: $@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'
   data_list_key: testing
   fast: false
-  ouptut_path: $@bundle_root + '/prediction_' + @infer#data_list_key
+  output_path: $@bundle_root + '/prediction_' + @infer#data_list_key
 input_channels: 1
 learning_rate: 0.0001
 loss:
@@ -62,5 +62,5 @@ resample_to_spacing: null
 softmax: true
 validate:
   ckpt_name: $@bundle_root + '/model_fold' + str(@fold) + '/best_metric_model.pt'
-  ouptut_path: $@bundle_root + '/prediction_fold' + str(@fold)
+  output_path: $@bundle_root + '/prediction_fold' + str(@fold)
   save_mask: true
diff --git a/auto3dseg/algorithm_templates/swinunetr/scripts/infer.py b/auto3dseg/algorithm_templates/swinunetr/scripts/infer.py
@@ -45,7 +45,7 @@ def __init__(self, config_file: Optional[Union[str, Sequence[str]]] = None, **ov
 
         ckpt_name = parser.get_parsed_content("infer")["ckpt_name"]
         data_list_key = parser.get_parsed_content("infer")["data_list_key"]
-        output_path = parser.get_parsed_content("infer")["ouptut_path"]
+        output_path = parser.get_parsed_content("infer")["output_path"]
 
         if not os.path.exists(output_path):
             os.makedirs(output_path, exist_ok=True)

diff --git a/auto3dseg/algorithm_templates/swinunetr/scripts/validate.py b/auto3dseg/algorithm_templates/swinunetr/scripts/validate.py
@@ -48,7 +48,7 @@ def run(config_file: Optional[Union[str, Sequence[str]]] = None, **override):
     softmax = parser.get_parsed_content("softmax")
 
     ckpt_name = parser.get_parsed_content("validate")["ckpt_name"]
-    output_path = parser.get_parsed_content("validate")["ouptut_path"]
+    output_path = parser.get_parsed_content("validate")["output_path"]
     save_mask = parser.get_parsed_content("validate")["save_mask"]
 
     if not os.path.exists(output_path):