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6676 port generative networks vqvae #7285

Merged
merged 31 commits into from
Dec 7, 2023
Merged

6676 port generative networks vqvae #7285

merged 31 commits into from
Dec 7, 2023

Commits on Dec 4, 2023

  1. wholeBody_ct_segmentation failed to be download (#7280) 

    Fixes model-zoo#537



### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: KumoLiu <yunl@nvidia.com>
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    KumoLiu authored Dec 4, 2023
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  2. Commit as an other branch 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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    marksgraham committed Dec 4, 2023
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  3. Fixes broken test case 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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    marksgraham committed Dec 4, 2023
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  4. Fixes mypy errors 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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    marksgraham committed Dec 4, 2023
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  5. Fixes for change in checkpointing before torch 1.11 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  6. Update docs

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    marksgraham committed Dec 4, 2023
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Commits on Dec 5, 2023

  1. Try to fix torch.autocast error 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  2. DCO Remediation Commit for Mark Graham <markgraham539@gmail.com> 

    I, Mark Graham <markgraham539@gmail.com>, hereby add my Signed-off-by to this commit: 8cf0525

Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  3. DCO 

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  4. Update monai/networks/layers/vector_quantizer.py 

    Co-authored-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  5. Clarify input tensors follow PyTorch convention 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  6. Merge branch '6676_port_generative_networks_vqvae]' of github.com:mar… 

    …ksgraham/MONAI into 6676_port_generative_networks_vqvae]
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  7. Rename argument to in_channels in the residual unit 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  8. Replace num_channels argument with channels for consistency with othe… 

    …r networks

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  9. Adds 3D test cases 

    Signed-off-by: Mark Graham <markgraham539@gmail.com>
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  10. Adds 3d test cases 

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Commits on Dec 6, 2023

  1. Merge branch 'gen-ai-dev' into 6676_port_generative_networks_vqvae]

    @KumoLiu
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  2. DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.git… 

    …hub.com>

I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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  3. DCO Remediation Commit for KumoLiu <yunl@nvidia.com> 

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Signed-off-by: KumoLiu <yunl@nvidia.com>
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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  5. DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.git… 

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I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

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  7. DCO Remediation Commit for KumoLiu <yunl@nvidia.com> 

    I, KumoLiu <yunl@nvidia.com>, hereby add my Signed-off-by to this commit: 10ae421

Signed-off-by: KumoLiu <yunl@nvidia.com>
DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.github.com>

I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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  8. Merge branch '6676_port_generative_networks_vqvae]' of https://github… 

    ….com/marksgraham/MONAI into 6676_port_generative_networks_vqvae]
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  9. DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.git… 

    …hub.com>

I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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Signed-off-by: KumoLiu <yunl@nvidia.com>
DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.github.com>

I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

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  13. DCO Remediation Commit for YunLiu <55491388+KumoLiu@users.noreply.git… 

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I, YunLiu <55491388+KumoLiu@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 2fc0126

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  14. fix flake8 

    Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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Commits on Dec 7, 2023

  1. fix doc 

    Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
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