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matplotlib 3.9.0 has no attribute 'get_cmap #7776

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ytl0623 opened this issue May 16, 2024 · 0 comments · Fixed by #7780
Closed

matplotlib 3.9.0 has no attribute 'get_cmap #7776

ytl0623 opened this issue May 16, 2024 · 0 comments · Fixed by #7780

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@ytl0623
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ytl0623 commented May 16, 2024 •
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Describe the bug
Hi, when I ran some checks before merging (#7712 ), there were some bugs.
Because of the check with matplotlib 3.8.4 worked perfectly, so I think the reason is the new version(3.9.0) of matplotlib (released Released: May 16, 2024) has no attribute 'get_cmap'.
The below log are some errors:

2024-05-16T10:23:10.3631070Z ======================================================================
2024-05-16T10:23:10.3631954Z ERROR: test_blend_00 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3633156Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3633925Z Traceback (most recent call last):
2024-05-16T10:23:10.3635837Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3637800Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3638729Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3639546Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3640375Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3641180Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3642006Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3642754Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3643554Z 
2024-05-16T10:23:10.3644105Z 
2024-05-16T10:23:10.3644298Z ======================================================================
2024-05-16T10:23:10.3644991Z ERROR: test_blend_01 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3645811Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3646431Z Traceback (most recent call last):
2024-05-16T10:23:10.3648682Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3649910Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3650774Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3651614Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3652537Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3653402Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3654264Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3655306Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3656113Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3656712Z 
2024-05-16T10:23:10.3656922Z ======================================================================
2024-05-16T10:23:10.3657686Z ERROR: test_blend_02 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3658652Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3659319Z Traceback (most recent call last):
2024-05-16T10:23:10.3661053Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3661977Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3662547Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3663172Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3664123Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3665087Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3666048Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3666936Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3667817Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3668461Z 
2024-05-16T10:23:10.3668686Z ======================================================================
2024-05-16T10:23:10.3669470Z ERROR: test_blend_03 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3670598Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3671268Z Traceback (most recent call last):
2024-05-16T10:23:10.3672797Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3674193Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3675132Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3676063Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3677041Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3677976Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3678925Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3679805Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3680740Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3681378Z 
2024-05-16T10:23:10.3681597Z ======================================================================
2024-05-16T10:23:10.3682388Z ERROR: test_blend_04 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3683191Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3683589Z Traceback (most recent call last):
2024-05-16T10:23:10.3684609Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3685544Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3686090Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3686616Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3687146Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3687647Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3688288Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3688777Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3689325Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3689731Z 
2024-05-16T10:23:10.3689865Z ======================================================================
2024-05-16T10:23:10.3690508Z ERROR: test_blend_05 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3691081Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3691476Z Traceback (most recent call last):
2024-05-16T10:23:10.3692927Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3694266Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3694998Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3695740Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3696336Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3696834Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3697433Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3697915Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3698556Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3698909Z 
2024-05-16T10:23:10.3699042Z ======================================================================
2024-05-16T10:23:10.3699500Z ERROR: test_blend_06 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3700143Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3700520Z Traceback (most recent call last):
2024-05-16T10:23:10.3701487Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3702364Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3702889Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3703574Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3704117Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3704625Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3705254Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3705752Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3706357Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3706709Z 
2024-05-16T10:23:10.3706836Z ======================================================================
2024-05-16T10:23:10.3707285Z ERROR: test_blend_07 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3707813Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3708200Z Traceback (most recent call last):
2024-05-16T10:23:10.3709192Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3710030Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3711000Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3711938Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3712894Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3713853Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3714793Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3715649Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3716534Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3717169Z 
2024-05-16T10:23:10.3717422Z ======================================================================
2024-05-16T10:23:10.3718209Z ERROR: test_blend_08 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3719140Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3719808Z Traceback (most recent call last):
2024-05-16T10:23:10.3721524Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3722990Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3724004Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3724951Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3725908Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3726535Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3727257Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3727880Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3728413Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3729021Z 
2024-05-16T10:23:10.3729173Z ======================================================================
2024-05-16T10:23:10.3729628Z ERROR: test_blend_09 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3730294Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3730691Z Traceback (most recent call last):
2024-05-16T10:23:10.3731648Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3732460Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3733106Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3733637Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3734323Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3734902Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3735425Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3736033Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3736561Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3736914Z 
2024-05-16T10:23:10.3737091Z ======================================================================
2024-05-16T10:23:10.3737622Z ERROR: test_blend_10 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3738166Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3738671Z Traceback (most recent call last):
2024-05-16T10:23:10.3739523Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3740439Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3740975Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3741615Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3742146Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3742756Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3743278Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3743763Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3744359Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
2024-05-16T10:23:10.3744719Z 
2024-05-16T10:23:10.3744859Z ======================================================================
2024-05-16T10:23:10.3745423Z ERROR: test_blend_11 (tests.test_blend_images.TestBlendImages)
2024-05-16T10:23:10.3745965Z ----------------------------------------------------------------------
2024-05-16T10:23:10.3746356Z Traceback (most recent call last):
2024-05-16T10:23:10.3747330Z   File "C:\hostedtoolcache\windows\Python\3.9.13\x64\lib\site-packages\parameterized\parameterized.py", line 620, in standalone_func
2024-05-16T10:23:10.3748225Z     return func(*(a + p.args), **p.kwargs, **kw)
2024-05-16T10:23:10.3748756Z   File "D:\a\MONAI\MONAI\tests\test_blend_images.py", line 50, in test_blend
2024-05-16T10:23:10.3749414Z     blended = blend_images(image, label, alpha)
2024-05-16T10:23:10.3749999Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 220, in blend_images
2024-05-16T10:23:10.3750507Z     label_rgb = get_label_rgb(cmap, label)
2024-05-16T10:23:10.3751145Z   File "D:\a\MONAI\MONAI\monai\visualize\utils.py", line 213, in get_label_rgb
2024-05-16T10:23:10.3751635Z     _cmap = cm.get_cmap(cmap)
2024-05-16T10:23:10.3752266Z AttributeError: module 'matplotlib.cm' has no attribute 'get_cmap'
KumoLiu added a commit to KumoLiu/MONAI that referenced this issue May 17, 2024
@KumoLiu
fix Project-MONAI#7776
3bc02b8 
Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
@KumoLiu KumoLiu mentioned this issue May 17, 2024
Merged
7 tasks
marksgraham pushed a commit to marksgraham/MONAI that referenced this issue May 22, 2024
@KumoLiu @marksgraham
Fix matplotlib 3.9.0 has no attribute 'get_cmap` (Project-MONAI#7780)
3e23785 
Fixes Project-MONAI#7776

A few sentences describing the changes proposed in this pull request.

<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [ ] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

---------

Signed-off-by: YunLiu <55491388+KumoLiu@users.noreply.github.com>
(cherry picked from commit 5e9ac1b)
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Fix matplotlib 3.9.0 has no attribute 'get_cmap` KumoLiu/MONAI
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@ytl0623