Merge branch 'master' into vector-tests

# Conflicts: # raphtory/src/search/mod.rs # raphtory/src/vectors/mod.rs
Pometry · Oct 2, 2023 · 45960e6 · 45960e6
2 parents fb7c126 + c7de680
commit 45960e6
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diff --git a/.environment.yml b/.environment.yml
@@ -26,91 +26,89 @@ dependencies:
   - xz>=5.2.5
   - zlib>=1.2.12
   - pip:
-      - accessible-pygments==0.0.4
-      - alabaster==0.7.13
-      - appnope==0.1.3
-      - asttokens==2.2.1
-      - attrs==23.1.0
-      - autodocsumm==0.2.11
-      - Babel==2.12.1
-      - backcall==0.2.0
-      - beautifulsoup4==4.12.2
-      - bleach==6.0.0
-      - certifi==2023.5.7
-      - charset-normalizer==3.1.0
-      - contourpy==1.1.0
-      - cycler==0.11.0
-      - decorator==5.1.1
-      - defusedxml==0.7.1
-      - docutils==0.19
-      - executing==1.2.0
-      - fastjsonschema==2.17.1
-      - fonttools==4.40.0
-      - idna==3.4
-      - imagesize==1.4.1
-      - ipython==8.14.0
-      - jedi==0.18.2
-      - Jinja2==3.1.2
-      - jsonpickle==3.0.1
-      - jsonschema==4.17.3
-      - jupyter_client==8.3.0
-      - jupyter_core==5.3.1
-      - jupyterlab-pygments==0.2.2
-      - kiwisolver==1.4.4
-      - MarkupSafe==2.1.3
-      - matplotlib==3.7.1
-      - matplotlib-inline==0.1.6
-      - maturin==1.1.0
-      - mistune==3.0.1
-      - nbclient==0.8.0
-      - nbconvert==7.6.0
-      - nbformat==5.9.0
-      - nbsphinx==0.9.2
-      - networkx==3.1
-      - numpy==1.25.0
-      - numpydoc==1.5.0
-      - packaging==23.1
-      - pandas==2.0.3
-      - pandocfilters==1.5.0
-      - parso==0.8.3
-      - pexpect==4.8.0
-      - pickleshare==0.7.5
-      - Pillow==10.0.0
-      - platformdirs==3.8.0
-      - prompt-toolkit==3.0.39
-      - ptyprocess==0.7.0
-      - pure-eval==0.2.2
-      - pydata-sphinx-theme==0.13.3
-      - Pygments==2.15.1
-      - pyparsing==3.1.0
-      - pyrsistent==0.19.3
-      - python-dateutil==2.8.2
-      - pytz==2023.3
-      - pyvis==0.3.2
-      - pyzmq==25.1.0
-      - requests==2.31.0
-      - six==1.16.0
-      - snowballstemmer==2.2.0
-      - soupsieve==2.4.1
-      - Sphinx==6.2.1
-      - sphinx-copybutton==0.5.2
-      - sphinx-toggleprompt==0.4.0
-      - sphinx_design==0.4.1
-      - sphinxcontrib-applehelp==1.0.4
-      - sphinxcontrib-devhelp==1.0.2
-      - sphinxcontrib-htmlhelp==2.0.1
-      - sphinxcontrib-jsmath==1.0.1
-      - sphinxcontrib-qthelp==1.0.3
-      - sphinxcontrib-serializinghtml==1.1.5
-      - stack-data==0.6.2
-      - tinycss2==1.2.1
-      - tomli==2.0.1
-      - tornado==6.3.2
-      - traitlets==5.9.0
-      - typing_extensions==4.7.1
-      - tzdata==2023.3
-      - urllib3==2.0.3
-      - wcwidth==0.2.6
-      - webencodings==0.5.1
-
-
+        - aiohttp==3.8.5
+        - aiosignal==1.3.1
+        - appnope==0.1.3
+        - asttokens==2.4.0
+        - async-timeout==4.0.3
+        - attrs==23.1.0
+        - autodocsumm==0.2.11
+        - backcall==0.2.0
+        - backoff==2.2.1
+        - bleach==6.0.0
+        - botocore==1.31.53
+        - certifi==2023.7.22
+        - contourpy==1.1.1
+        - cycler==0.11.0
+        - decorator==5.1.1
+        - defusedxml==0.7.1
+        - docopt==0.6.2
+        - exceptiongroup==1.1.3
+        - executing==1.2.0
+        - fastjsonschema==2.18.0
+        - fonttools==4.42.1
+        - frozenlist==1.4.0
+        - gql==3.4.1
+        - graphql-core==3.2.3
+        - ipython==8.15.0
+        - jedi==0.19.0
+        - jmespath==1.0.1
+        - jsonpickle==3.0.2
+        - jsonschema==4.19.1
+        - jsonschema-specifications==2023.7.1
+        - jupyter_client==8.3.1
+        - jupyter_core==5.3.1
+        - jupyterlab-pygments==0.2.2
+        - kiwisolver==1.4.5
+        - matplotlib==3.8.0
+        - matplotlib-inline==0.1.6
+        - maturin==1.2.3
+        - mistune==3.0.1
+        - multidict==6.0.4
+        - nbclient==0.8.0
+        - nbconvert==7.8.0
+        - nbformat==5.9.2
+        - nbsphinx==0.9.3
+        - networkx==3.1
+        - numpy==1.26.0
+        - numpydoc==1.5.0
+        - pandas==2.1.1
+        - pandocfilters==1.5.0
+        - parso==0.8.3
+        - pexpect==4.8.0
+        - pickleshare==0.7.5
+        - Pillow==10.0.1
+        - pipreqs==0.4.13
+        - platformdirs==3.10.0
+        - prompt-toolkit==3.0.39
+        - ptyprocess==0.7.0
+        - pure-eval==0.2.2
+        - pyarrow==13.0.0
+        - pydata-sphinx-theme==0.14.1
+        - pyparsing==3.1.1
+        - python-dateutil==2.8.2
+        - pyvis==0.3.2
+        - pyzmq==25.1.1
+        - referencing==0.30.2
+        - requests-toolbelt==0.10.1
+        - rpds-py==0.10.3
+        - six==1.16.0
+        - sphinx-automodapi==0.16.0
+        - sphinx-autosummary-accessors==2023.4.0
+        - sphinx-copybutton==0.5.2
+        - sphinx-favicon==1.0.1
+        - sphinx_design==0.5.0
+        - sphinx-notfound-page==1.0.0
+        - stack-data==0.6.2
+        - tinycss2==1.2.1
+        - tomli==2.0.1
+        - tornado==6.3.3
+        - traitlets==5.10.0
+        - typing_extensions==4.8.0
+        - tzdata==2023.3
+        - urllib3==1.26.16
+        - wcwidth==0.2.6
+        - webencodings==0.5.1
+        - websockets==10.4
+        - yarg==0.1.9
+        - yarl==1.9.2
diff --git a/comparison-benchmark/rust/raphtory-rust-benchmark/src/main.rs b/comparison-benchmark/rust/raphtory-rust-benchmark/src/main.rs
@@ -4,8 +4,8 @@ use csv::StringRecord;
 use flate2::read::GzDecoder;
 use raphtory::{
     algorithms::{
-        algorithm_result::AlgorithmResult, connected_components::weakly_connected_components,
-        pagerank::unweighted_page_rank,
+        algorithm_result::AlgorithmResult, centrality::pagerank::unweighted_page_rank,
+        community_detection::connected_components::weakly_connected_components,
     },
     graph_loader::{fetch_file, source::csv_loader::CsvLoader},
     prelude::{AdditionOps, Graph, GraphViewOps, VertexViewOps, NO_PROPS},
@@ -202,11 +202,11 @@ fn main() {
         .collect();
     println!("Page rank: {} seconds", now.elapsed().as_secs_f64());
 
-    // connected components with time
+    // connected community_detection with time
     now = Instant::now();
     let _cc: AlgorithmResult<String, u64> = weakly_connected_components(&g, usize::MAX, None);
     println!(
-        "Connected components: {} seconds",
+        "Connected community_detection: {} seconds",
         now.elapsed().as_secs_f64()
     );
 }
diff --git a/docs/LICENSE b/docs/LICENSE
diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -1,86 +1,86 @@
-accessible-pygments==0.0.4
-alabaster==0.7.13
+aiohttp==3.8.5
+aiosignal==1.3.1
 appnope==0.1.3
-asttokens==2.2.1
+asttokens==2.4.0
+async-timeout==4.0.3
 attrs==23.1.0
 autodocsumm==0.2.11
-Babel==2.12.1
 backcall==0.2.0
-beautifulsoup4==4.12.2
+backoff==2.2.1
 bleach==6.0.0
+botocore==1.31.53
 certifi==2023.7.22
-charset-normalizer==3.1.0
-contourpy==1.1.0
+contourpy==1.1.1
 cycler==0.11.0
 decorator==5.1.1
 defusedxml==0.7.1
-docutils==0.19
+docopt==0.6.2
+exceptiongroup==1.1.3
 executing==1.2.0
-fastjsonschema==2.17.1
-fonttools==4.40.0
-idna==3.4
-imagesize==1.4.1
-ipython==8.14.0
-jedi==0.18.2
-Jinja2==3.1.2
-jsonpickle==3.0.1
-jsonschema==4.17.3
-jupyter_client==8.3.0
+fastjsonschema==2.18.0
+fonttools==4.42.1
+frozenlist==1.4.0
+gql==3.4.1
+graphql-core==3.2.3
+ipython==8.15.0
+jedi==0.19.0
+jmespath==1.0.1
+jsonpickle==3.0.2
+jsonschema==4.19.1
+jsonschema-specifications==2023.7.1
+jupyter_client==8.3.1
 jupyter_core==5.3.1
 jupyterlab-pygments==0.2.2
-kiwisolver==1.4.4
-MarkupSafe==2.1.3
-matplotlib==3.7.1
+kiwisolver==1.4.5
+matplotlib==3.8.0
 matplotlib-inline==0.1.6
-maturin==1.1.0
+maturin==1.2.3
 mistune==3.0.1
+multidict==6.0.4
 nbclient==0.8.0
-nbconvert==7.6.0
-nbformat==5.9.0
-nbsphinx==0.9.2
+nbconvert==7.8.0
+nbformat==5.9.2
+nbsphinx==0.9.3
 networkx==3.1
-numpy==1.25.0
+numpy==1.26.0
 numpydoc==1.5.0
-packaging==23.1
-pandas==2.0.3
+pandas==2.1.1
 pandocfilters==1.5.0
 parso==0.8.3
 pexpect==4.8.0
 pickleshare==0.7.5
-Pillow==10.0.0
-platformdirs==3.8.0
+Pillow==10.0.1
+pipreqs==0.4.13
+platformdirs==3.10.0
 prompt-toolkit==3.0.39
 ptyprocess==0.7.0
 pure-eval==0.2.2
-pydata-sphinx-theme==0.13.3
-Pygments==2.15.1
-pyparsing==3.1.0
-pyrsistent==0.19.3
+pyarrow==13.0.0
+pydata-sphinx-theme==0.14.1
+pyparsing==3.1.1
 python-dateutil==2.8.2
-pytz==2023.3
 pyvis==0.3.2
-pyzmq==25.1.0
-requests==2.31.0
+pyzmq==25.1.1
+referencing==0.30.2
+requests-toolbelt==0.10.1
+rpds-py==0.10.3
 six==1.16.0
-snowballstemmer==2.2.0
-soupsieve==2.4.1
-sphinx==6.2.1
+sphinx-automodapi==0.16.0
+sphinx-autosummary-accessors==2023.4.0
 sphinx-copybutton==0.5.2
-sphinx-toggleprompt==0.4.0
-sphinx_design==0.4.1
-sphinxcontrib-applehelp==1.0.4
-sphinxcontrib-devhelp==1.0.2
-sphinxcontrib-htmlhelp==2.0.1
-sphinxcontrib-jsmath==1.0.1
-sphinxcontrib-qthelp==1.0.3
-sphinxcontrib-serializinghtml==1.1.5
+sphinx-favicon==1.0.1
+sphinx_design==0.5.0
 stack-data==0.6.2
 tinycss2==1.2.1
 tomli==2.0.1
 tornado==6.3.3
-traitlets==5.9.0
-typing_extensions==4.7.1
+traitlets==5.10.0
+typing_extensions==4.8.0
 tzdata==2023.3
-urllib3==2.0.3
+urllib3==1.26.16
 wcwidth==0.2.6
 webencodings==0.5.1
+websockets==10.4
+yarg==0.1.9
+yarl==1.9.2
+sphinx-notfound-page==1.0.0
diff --git a/docs/source/404.rst b/docs/source/404.rst
@@ -0,0 +1,12 @@
+:orphan:
+.. _notfound:
+
+Page Not Found
+==============
+
+Sorry, the page you are looking for cannot be found.
+
+.. image:: _static/pomegranate-mascot.png
+   :alt: 404 Cute Pomegranate mascot
+   :align: center
+