Copy cwl adapters to the wheel

setup.py

@@ -0,0 +1,27 @@
+import shutil
+from pathlib import Path
+from setuptools import setup, find_packages
+from setuptools.command.build_py import build_py as _build_py
+import versioneer
+
+class build_py(_build_py):
+    def run(self):
+        # Copy cwl adapters to the package directory
+        target_dir = Path(self.build_lib) / 'sophios/cwl_adapters'
+        adapters_dir = Path(__file__).parent / 'cwl_adapters'
+        shutil.copytree(adapters_dir, target_dir, dirs_exist_ok=True)
+
+        # Continue with the standard build process
+        super().run()
+
+setup(
+    name="sophios",
+    version=versioneer.get_version(),
+    packages=find_packages(where="src"),
+    package_dir={"": "src"},
+    include_package_data=True,
+    cmdclass={'build_py': build_py},
+    package_data={
+        "sophios": ["cwl_adapters/*.cwl"], 
+    },
+)